Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G01
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26850.1 68418.m03203 expressed protein                             29   2.7  
At1g80920.1 68414.m09494 DNAJ heat shock N-terminal domain-conta...    29   2.7  
At4g05580.1 68417.m00849 hypothetical protein                          29   3.6  
At3g01680.1 68416.m00099 expressed protein                             29   3.6  
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...    28   4.8  
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)              28   4.8  
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...    28   4.8  
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...    28   4.8  
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative            28   4.8  
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...    28   4.8  
At1g42630.1 68414.m04918 zinc knuckle (CCHC-type) family protein...    28   6.3  
At1g40080.1 68414.m04737 hypothetical protein member of hypothet...    28   6.3  

>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 214 HYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNEQLNW 345
           H  +E R G   I S    ++    Q  L S  A G LNE  NW
Sbjct: 498 HPNVETRVGAHEIFSVILLQSSGQSQAGLASVRASGYLNESRNW 541


>At1g80920.1 68414.m09494 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q05646 Chaperone
           protein dnaJ Erysipelothrix rhusiopathiae, SP|P45555
           Chaperone protein dnaJ (HSP40) Staphylococcus aureus;
           contains Pfam profile PF00226 DnaJ domain
          Length = 163

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 608 VCRGSGCGEVFSTLAKAASLIL 543
           VCRGS CG  F T+ +A  ++L
Sbjct: 86  VCRGSNCGVQFQTINEAYDIVL 107


>At4g05580.1 68417.m00849 hypothetical protein 
          Length = 116

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 305 VQRQKGR*MNNSIGYCRMRCGWNTRIMLTN 394
           V++ KG    ++ GY +MRC WN  ++ TN
Sbjct: 84  VEKNKGLAYESTTGYYQMRCRWN--VLTTN 111


>At3g01680.1 68416.m00099 expressed protein 
          Length = 740

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
 Frame = +1

Query: 4   LCYRHVELHLDNFVKFTPTCYLKT-YSFLTMSNLFKLK-LSALGHPNPEFFNCEDEKEYR 177
           LCYRH+E       K   +  LK  +S    +++  +K L+AL HP P     +D    R
Sbjct: 295 LCYRHIE-------KQRSSESLKVLHSLFDTTHIDNMKILTALVHPKPHITPLQDGLTKR 347

Query: 178 SVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNEQLNWL 348
            V L +  +K     I D   L++ +   +++ Y   +++LV    +  +  ++ W+
Sbjct: 348 KVHLDVLRRKTVLLLISDLNILQD-ELSIFEQIYTESRRNLVGVDGKSHMPYEVVWV 403


>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  LDNFVKFTPTCYLKTYSFLT 90
           L NFVK T  C  KTY FLT
Sbjct: 218 LGNFVKATFDCLQKTYGFLT 237


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  LDNFVKFTPTCYLKTYSFLT 90
           L NFVK T  C  KTY FLT
Sbjct: 227 LGNFVKATFDCLQKTYGFLT 246


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  LDNFVKFTPTCYLKTYSFLT 90
           L NFVK T  C  KTY FLT
Sbjct: 226 LGNFVKATFDCLQKTYGFLT 245


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  LDNFVKFTPTCYLKTYSFLT 90
           L NFVK T  C  KTY FLT
Sbjct: 226 LGNFVKATFDCLQKTYGFLT 245


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  LDNFVKFTPTCYLKTYSFLT 90
           L NFVK T  C  KTY FLT
Sbjct: 226 LGNFVKATFDCLQKTYGFLT 245


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  LDNFVKFTPTCYLKTYSFLT 90
           L NFVK T  C  KTY FLT
Sbjct: 226 LGNFVKATFDCLQKTYGFLT 245


>At1g42630.1 68414.m04918 zinc knuckle (CCHC-type) family protein
           contains Pfam profile PF00098: Zinc knuckle
          Length = 154

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 305 VQRQKGR*MNNSIGYCRMRCGWN 373
           V++ KG    ++ GY +MRC WN
Sbjct: 84  VEKNKGLTYESTTGYYQMRCRWN 106


>At1g40080.1 68414.m04737 hypothetical protein member of
           hypothetical protein common family
          Length = 154

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 305 VQRQKGR*MNNSIGYCRMRCGWN 373
           V++ KG    ++ GY +MRC WN
Sbjct: 84  VEKNKGLAYESTTGYYQMRCRWN 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,254,603
Number of Sequences: 28952
Number of extensions: 227509
Number of successful extensions: 618
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)