Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F24
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 91 8e-19
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 86 2e-17
02_02_0470 - 10700092-10700505 30 1.7
10_08_0951 - 21769342-21769752 29 3.9
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 6.8
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 27 8.9
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 27 8.9
01_06_0579 + 30379243-30379617 27 8.9
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 90.6 bits (215), Expect = 8e-19
Identities = 55/121 (45%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Frame = +1
Query: 265 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 429
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 430 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDY 609
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 610 F 612
F
Sbjct: 147 F 147
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Frame = +1
Query: 316 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 489
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 490 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 612
GPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 170
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 391 LKIGTVCILLAGRHAGKRVVLVGILPSG 474
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 391 LKIGTVCILLAGRHAGKRVVLVGILPSG 474
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 255 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWP 353
W+ E Q+++P ++ L H+G+ C++WWP
Sbjct: 86 WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 370 VRRIRPNLKIGTVCILLAGRHA-GKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 546
V R+R + I V L RH +R+ L + + +++ P + LR+ I
Sbjct: 385 VGRLRFPIIINLVHSALGSRHVFWRRIFLNSCMLAAIVM---PLFVDDPDLRKAMVAVDI 441
Query: 547 CTSTRISLGNFKLP 588
C +SLGNF++P
Sbjct: 442 CAVPILSLGNFQIP 455
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 469 SGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFN 600
SG GP+ + P R Q+ C T G P HFN
Sbjct: 403 SGCREAGGPWTWRESPASRAMQKCPACKRTHTGDGRTVKPAHFN 446
>01_06_0579 + 30379243-30379617
Length = 124
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 314 TPLRRKSVPHLVAVHSASMYAGSD 385
+P+RR S PH +A S+ ++ G D
Sbjct: 17 SPMRRSSSPHRLASSSSDLHGGDD 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,317
Number of Sequences: 37544
Number of extensions: 379857
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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