Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F24
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               50   1e-06
SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            28   6.9  
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +1

Query: 493 PFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKH-FNDD-YF 612
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 43


>SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 514 PLRRIPQRYVICTSTR 561
           PLRR P RY IC  TR
Sbjct: 29  PLRRTPDRYAICDDTR 44


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 276 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 392
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 514 PLRRIPQRYVICTSTR 561
           PLRR P RY IC  TR
Sbjct: 33  PLRRTPDRYAICDDTR 48



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 514 PLRRIPQRYVICTSTR 561
           PLRR P RY IC  TR
Sbjct: 106 PLRRTPDRYAICDDTR 121


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 278 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 385
           P  Y ++ GSP+   +RK+ PH    HS+   A  D
Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147


>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +1

Query: 400 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNF 579
           G +C+ L   +  ++V L  ++  G++       FN   L  +     ICT T +S+   
Sbjct: 340 GLICMFLNKINKSRQVPLNSVIAVGVITGLSSLVFNMRELVELVAVATICTYTSVSV--C 397

Query: 580 KLPKHFNDDY 609
            L   F  DY
Sbjct: 398 VLVSRFQADY 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,815
Number of Sequences: 59808
Number of extensions: 407586
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)