Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F24
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 312 LPHSGENPCLIWWPSIQQACTQDPTQ 389
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 610 SNHH*SVLAV*SCRVKFWWRCRSH 539
           S H+ S + V +  + FW+ C  H
Sbjct: 767 SGHYDSSVDVYAFGILFWYLCAGH 790


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 610 SNHH*SVLAV*SCRVKFWWRCRSH 539
           S H+ S + V +  + FW+ C  H
Sbjct: 805 SGHYDSSVDVYAFGILFWYLCAGH 828


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,165
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)