Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F24
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    94   6e-20
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    94   6e-20
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    89   2e-18
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.4  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   3.2  
At2g27270.1 68415.m03277 expressed protein                             28   4.3  
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote...    27   7.5  
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    27   9.9  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 61/166 (36%), Positives = 88/166 (53%)
 Frame = +1

Query: 115 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 294
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 295 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 474
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 475 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 612
           LLLVTGPF  N  PLRR+ Q YVI TST++ +    L K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 61/166 (36%), Positives = 88/166 (53%)
 Frame = +1

Query: 115 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 294
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 295 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 474
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 475 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 612
           LLLVTGPF  N  PLRR+ Q YVI TST++ +    L K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 60/166 (36%), Positives = 85/166 (51%)
 Frame = +1

Query: 115 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 294
           RN DL  GV ++S+S+M+HK+  +                  V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58

Query: 295 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 474
           ++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116

Query: 475 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 612
           LLLVTGPF  N  PLRR+ Q YVI TST+I +      K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 289 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 378
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 255 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 356
           W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 316 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 495
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 496 FAFNSCPLR-RIPQ 534
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
           kinase, putative similar to CLV1 receptor kinase
           GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
          Length = 601

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 432 CRQEGCTCWNSAQRSAFSYWTFCIQFVPATPHSSALC 542
           C+  G +CWN  +    S     +Q     P S  LC
Sbjct: 59  CKLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLC 95


>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 738

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 111 FFRRF-FFSHRTCSCGSRLGHRFRL 40
           F R F FFS RTCS  S + ++FRL
Sbjct: 30  FSRYFSFFSSRTCSPESSINNQFRL 54


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 432 CRQEGCTCWNSAQRSAFSYWTFCIQFVPATPHSSALC 542
           C+  G +CWN+ +    S     +Q     P S  LC
Sbjct: 52  CKLTGVSCWNAKENRILSLQLQSMQLSGQIPESLKLC 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,403
Number of Sequences: 28952
Number of extensions: 282567
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)