Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F21
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.3  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 462 SFLFASTTRGNNFSLQ*ALNESRTAFSS---SWSCPSKLNGSTQS 337
           SF+  +T       LQ  +NE +  +S+   S SCP   +GST S
Sbjct: 344 SFVCVNTLVSEQEGLQ-LINEMKKRYSALINSQSCPITSSGSTDS 387


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 162 PLQRISLVNEILLISQLTTFYIRILYASLFSTLH*QILTKHF 37
           P  R   ++  L   QLT  Y +I  A    +LH Q+L + F
Sbjct: 267 PYLRFGCLSTRLFYYQLTDLYKKIKKAFPPLSLHGQLLWREF 308


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 290 IRALSTTYSRNAKVTFDWVDPF 355
           I+ L T  +RN K    W  PF
Sbjct: 379 IKILKTVSNRNDKGDIFWFSPF 400


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,287
Number of Sequences: 336
Number of extensions: 3121
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)