Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F21
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    50   2e-06
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    44   1e-04
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849...    28   6.9  
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    28   6.9  

>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 42/85 (49%)
 Frame = +2

Query: 347 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 526
           D + +D  L  +E+++R + RA   +++ P +        F      +L  LG  G TIK
Sbjct: 42  DYYQIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGTIK 101

Query: 527 GYGCAGVSYVTYGLITRELXGVDSS 601
           GYGC G+S     +   E+  VD+S
Sbjct: 102 GYGCPGLSITASAITMAEIARVDAS 126


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +2

Query: 359 LDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGC 538
           LD  L ++EK ++   R +   ++ P + +      F   +  ++  LG  G TIKGYGC
Sbjct: 57  LDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAGGTIKGYGC 116

Query: 539 AGVSYVTYGLITRELXGVDSSYRS 610
            G+S     +   E+  VD+S  S
Sbjct: 117 PGLSGPACAMCFLEIARVDASIAS 140


>08_02_1249 -
           25584175-25584325,25584520-25584625,25584801-25584963,
           25585047-25585241,25585286-25585548,25585654-25585774
          Length = 332

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 366 DNSMTTKKQCEIHSGPTVMKSYYLVWLRQIGMRCSIEKSIMNS 494
           D+S      CE H  P +M+  +L W     +RC +  ++++S
Sbjct: 94  DSSKACYTNCEDHFHPAIMRLSFLSW--NSDLRCHLVAAVLDS 134


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 512 PERLIHRVHYRFLYGT--PHSYLPQPHEVITFHYSR 411
           PE+ +   HY + YGT    +Y P P   + F+Y+R
Sbjct: 120 PEQQLPYPHYAYGYGTGPAFAYPPPPASSLQFYYAR 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,242
Number of Sequences: 37544
Number of extensions: 283138
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)