Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F21
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)         32   0.43 
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       30   1.3  
SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_4317| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)          29   3.1  
SB_10463| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-07)         29   4.1  
SB_57401| Best HMM Match : fn3 (HMM E-Value=2e-09)                     27   9.4  
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)                     27   9.4  
SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)
          Length = 1290

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +2

Query: 422  EKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGCAGVSYVTYGLITRELXGVDSS 601
            E  LP+ VE  R+ V HRE+   + EL + G    G    GVS   Y ++T+E  GV+  
Sbjct: 852  ENSLPQRVEVPRSLVTHREVIKSI-ELHSFG----GASAQGVSACVYAVVTQE-SGVNQG 905

Query: 602  YRSA 613
              +A
Sbjct: 906  LVAA 909


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/65 (29%), Positives = 37/65 (56%)
 Frame = -1

Query: 456 LFASTTRGNNFSLQ*ALNESRTAFSSSWSCPSKLNGSTQSKVTFAFLEYVVDNALMLFDL 277
           + ASTT+G    ++ A+  +RTAF  SW   SKL G  +++  ++   +V  +A ++  L
Sbjct: 669 VLASTTQGETQDIEDAVKAARTAF-QSW---SKLPGHARARHLYSIARHVQKHARLIAVL 724

Query: 276 HIVES 262
             +++
Sbjct: 725 ESMDN 729


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 494  GELGALGCTIKGYGCAGVSYVTYGLITRELXGVDSSYRSAMS 619
            G+     CT+KGY    + +   GL  +E   + S+Y  A+S
Sbjct: 3367 GQTATFECTVKGYPRPSIEWFKNGLPLKENERIASTYEGALS 3408


>SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = -1

Query: 396 RTAFSSSWSCPSKLNGSTQSKVTFAFLEYVVDNALML--------FDLHIVESIYLEVND 241
           R AF  SW+    L  S  + V+ AF +YVV+              DL I+E +   V  
Sbjct: 323 RVAFLFSWTSTILLKPSQIAIVSLAFGQYVVEPFFPTCSGFDPDRLDLKILEKLLAAVCI 382

Query: 240 TIITHIQCF 214
            +IT++ CF
Sbjct: 383 GVITYVNCF 391


>SB_4317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 290 IRALSTTYSRNAKVTFDWVDP 352
           +R+L+  Y  N K++F WVDP
Sbjct: 51  VRSLAKAYKSNEKLSFVWVDP 71


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 422 EKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGCAGVSYVTYGLITRELXGVDSS 601
           E  LP+ VE  R+ V HRE+   + EL + G         GVS   Y ++T+E  GV+  
Sbjct: 715 ENSLPQRVEVPRSLVTHREVIKSI-ELHSFG----DASAQGVSACVYAVVTQE-SGVNQG 768

Query: 602 YRSA 613
             +A
Sbjct: 769 LVAA 772


>SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)
          Length = 840

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 422 EKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGCAGVSYVTYGLITRELXGVDSS 601
           E  LP+ VE  R+ V HRE+   + EL + G         GVS   Y ++T+E  GV+  
Sbjct: 403 ENSLPQRVEVPRSLVTHREVIKSI-ELHSFG----DASAQGVSACVYAVVTQE-SGVNQG 456

Query: 602 YRSA 613
             +A
Sbjct: 457 LVAA 460


>SB_10463| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-07)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 422 EKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGCAGVSYVTYGLITRELXGVDSS 601
           E  LP+ VE  R+ V HRE+   + EL + G         GVS   Y ++T+E  GV+  
Sbjct: 19  ENSLPQRVEVPRSLVTHREVIKSI-ELHSFG----DASVQGVSACVYAVVTQE-SGVNQG 72

Query: 602 YRSA 613
             +A
Sbjct: 73  LVAA 76


>SB_57401| Best HMM Match : fn3 (HMM E-Value=2e-09)
          Length = 111

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 296 ALSTTYSRNAKVTFDWVDPFNLDGQ 370
           +L+TT+S ++ +T  W+ P N  G+
Sbjct: 8   SLNTTFSNDSAITLSWLPPNNTGGR 32


>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = +2

Query: 305 TTYSRNAKVTFDWVDPFNLDGQL----HDDEKAVRDSFRAYCN--EKLLPRVVEANRNEV 466
           TT S+N +     +D   L G L    H D + V D  R  C+  + L  R   + +   
Sbjct: 110 TTISQNGRYGTLKIDVPKLMGHLRLVAHKDGQKVYDK-RVDCDTIDILTKRFNGSKKYSD 168

Query: 467 FHREIYNELGELGALGC--TIKGYGCAGVSYVTY 562
             R ++NEL ELG L    T K Y   G   V Y
Sbjct: 169 ISRMVFNELNELGELPIHRTSKKYSKIGSGVVYY 202


>SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 296 ALSTTYSRNAKVTFDWVDPFNLDGQ 370
           +L+TT+S ++ +T  W+ P N  G+
Sbjct: 304 SLNTTFSNDSAITLSWLPPNNTGGR 328


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 476 LYGTPHSYLPQPHEVITFHYSRP*MNLALLFRRHGVVHLN*MGPPNRKSLSHFLNML 306
           L+G PH  +PQ H  I  + SRP +    +   H  + L    P   K+LSH   ++
Sbjct: 235 LFGLPHRVIPQQH--IAVNISRPALQYIYMLEFHPSLALAAKIP---KALSHVFKVM 286


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 395 RDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCT 520
           R   +A+C   +  ++  A+ NE +HR +  E   LGA GCT
Sbjct: 8   RREVKAFCAAFVSKQI--ADLNEQYHRLLRCECAMLGAEGCT 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,659
Number of Sequences: 59808
Number of extensions: 355366
Number of successful extensions: 697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)