Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F21
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    52   4e-07
At4g29560.1 68417.m04215 expressed protein                             28   5.8  
At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD...    27   7.7  

>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%)
 Frame = +2

Query: 347 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 526
           D ++ +  L  +E+A+R   R    +++ P + E      F   I  +LG +G  G +IK
Sbjct: 47  DYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK 106

Query: 527 GYGCAGVSYVTYGLITRELXGVDSS 601
           GYGC G+S     + T E+  VD+S
Sbjct: 107 GYGCPGLSITANAIATAEIARVDAS 131


>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 317 RNAKVTFDWVDPFNLDGQLHDDEKAVRDSFRAYCNEKL 430
           R  K  F+W+   +LD    D  K V DS   + +EKL
Sbjct: 126 RIPKPKFEWISNLDLDSADEDSMKQVFDSVPDWLSEKL 163


>At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD) /
           sigma-like factor (SIG4) identical to RNA polymerase
           sigma subunit SigD [Arabidopsis thaliana] GI:4972296,
           sigma-like factor [Arabidopsis thaliana] GI:3983260;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 419

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 420 MKSYYLVWLRQIGMRCSIEKSIMNSVN*ALWVVPLKVTDALEFLTLRM 563
           + +Y   W++Q  +R    KS +  +  ++W +  KV +A   LT ++
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKL 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,808
Number of Sequences: 28952
Number of extensions: 249660
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)