Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F17
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 316 9e-87
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 311 3e-85
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 311 3e-85
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 311 3e-85
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 311 3e-85
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 310 4e-85
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 71 6e-13
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 32 0.42
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.9
At3g01450.1 68416.m00069 expressed protein 29 3.9
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 3.9
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 3.9
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.1
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 316 bits (776), Expect = 9e-87
Identities = 142/182 (78%), Positives = 164/182 (90%)
Frame = +3
Query: 150 QKXWVPVTKLGRLVRXGKIDKLEXIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQT 329
++ WVPVTKLGRLV+ GKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQT
Sbjct: 42 EEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQT 101
Query: 330 RAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGK 509
RAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGK
Sbjct: 102 RAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGK 161
Query: 510 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGNF 689
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGNF
Sbjct: 162 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221
Query: 690 AK 695
K
Sbjct: 222 VK 223
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 311 bits (764), Expect = 3e-85
Identities = 143/179 (79%), Positives = 159/179 (88%)
Frame = +3
Query: 159 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 338
WVPVTKLGRLV KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 339 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 518
QRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 519 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGNFAK 695
VPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGNF K
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 311 bits (764), Expect = 3e-85
Identities = 143/179 (79%), Positives = 159/179 (88%)
Frame = +3
Query: 159 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 338
WVPVTKLGRLV KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 339 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 518
QRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 519 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGNFAK 695
VPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGNF K
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 311 bits (764), Expect = 3e-85
Identities = 143/179 (79%), Positives = 159/179 (88%)
Frame = +3
Query: 159 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 338
WVPVTKLGRLV KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 339 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 518
QRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 519 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGNFAK 695
VPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGNF K
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 311 bits (764), Expect = 3e-85
Identities = 143/179 (79%), Positives = 159/179 (88%)
Frame = +3
Query: 159 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 338
WVPVTKLGRLV KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 339 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 518
QRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 519 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGNFAK 695
VPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGNF K
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 310 bits (762), Expect = 4e-85
Identities = 141/182 (77%), Positives = 161/182 (88%)
Frame = +3
Query: 150 QKXWVPVTKLGRLVRXGKIDKLEXIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQT 329
++ WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQT
Sbjct: 51 EEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQT 110
Query: 330 RAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGK 509
RAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGK
Sbjct: 111 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGK 170
Query: 510 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGNF 689
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGNF
Sbjct: 171 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 230
Query: 690 AK 695
K
Sbjct: 231 VK 232
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 71.3 bits (167), Expect = 6e-13
Identities = 40/132 (30%), Positives = 70/132 (53%)
Frame = +3
Query: 291 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 470
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 471 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCY 650
V + K T P + G G+ V L PA GTG+++ +L MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 261
Query: 651 TSXRGSTGTLGN 686
GS L N
Sbjct: 262 GKQLGSNNALNN 273
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/124 (23%), Positives = 54/124 (43%)
Frame = +3
Query: 297 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 476
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 477 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTS 656
R + HT+ + + L PAP TG+ + V +L +AG ++ +
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474
Query: 657 XRGS 668
GS
Sbjct: 475 VIGS 478
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 499 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 320
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 319 CTGMIFRTSSFR 284
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 520 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 341
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 340 CPARVCF 320
A CF
Sbjct: 218 AKASTCF 224
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 453 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMA 632
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 633 GVQ 641
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 453 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMA 632
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 633 GVQ 641
GV+
Sbjct: 257 GVE 259
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 357 AFVAIGDNNGHIGLGVKCSKE 419
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 513 HTVPCKVTGKCGSVTVRL 566
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,670
Number of Sequences: 28952
Number of extensions: 288285
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -