Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F16
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.37 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.5  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 221 EPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSXSTRMRAE*T 54
           +P  VI + T  PS  L+NR G+      A+         P T+T+  T +  + T
Sbjct: 123 KPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFT 178


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +1

Query: 19  KLKMVSKAELACVYSALILVDXDVA---------VTGEKISTILKAAAVDVEPYWPGLFA 171
           ++KM  K EL C+  A+IL + DV          +  EKI  +L+       P  PG FA
Sbjct: 305 EMKM-DKTELGCL-RAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFA 362

Query: 172 KAL 180
           K L
Sbjct: 363 KLL 365


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 198 TDIDAFQGFGEQTWPI 151
           TD+D F+G     WP+
Sbjct: 515 TDLDDFKGVCGMKWPL 530


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,959
Number of Sequences: 336
Number of extensions: 1412
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)