Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F16
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   3e-23
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        35   0.031
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   8.1  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score =  104 bits (250), Expect = 3e-23
 Identities = 53/112 (47%), Positives = 65/112 (58%)
 Frame = +1

Query: 28  MVSKAELACVYSALILVDXDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 207
           M S +ELACVYSALIL D DVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 208 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 363
             + +G                                   SDDDMGFGLFD
Sbjct: 61  --LSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 207 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGN 109
           DQ+  I+ F+  G++ WP +  + S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 331 SDDDMGFGLFD 363
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 216  DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 94
            D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2100 DLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 133 PPLSRWWKFSHQLRQHXH 80
           PP  RWW++ H LRQ  H
Sbjct: 394 PP--RWWRYRHVLRQMGH 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,017
Number of Sequences: 59808
Number of extensions: 162623
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)