Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F14
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.23
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.23
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.30
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.52
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.52
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.69
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 29 0.91
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 3.7
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 3.7
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 4.9
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.9
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 6.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 6.4
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 6.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.5
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 8.5
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 197 SPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 343
+P+K PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 191 KASPVKXSPAKXVEAAES-NGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 367
KA PV+ P K + +++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 368 KRK 376
+K
Sbjct: 182 DKK 184
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 230 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 340
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = +2
Query: 176 TSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 355
+ +E ++S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 356 ET 361
+
Sbjct: 193 SS 194
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = +2
Query: 176 TSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 355
+ +E ++S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 356 ET 361
+
Sbjct: 247 SS 248
Score = 29.1 bits (62), Expect = 0.69
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +2
Query: 167 EXVTSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 346
E +S+E S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 179 STEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESND-ASENGDATEKK 355
S+ +S S + E+ E T+E E S + D+E S+D +SE+GD+
Sbjct: 166 SSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSS 225
Query: 356 ET 361
++
Sbjct: 226 DS 227
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 191 KASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 358
KA K + VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 360 KALQQKLENERIVEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 28.7 bits (61), Expect = 0.91
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 691 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 542
++LL C ++ L+LN+ + L +R + ++ SGICGC
Sbjct: 93 KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 236 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 388
+ES ++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 251 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 388
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 161 APEXVTSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 340
+P S + K K + E KE EA EE A N
Sbjct: 376 SPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENNEV 435
Query: 341 ATEKKETGVKRKSV 382
TEKKET +K +V
Sbjct: 436 VTEKKETDIKSDAV 449
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 173 VTSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 352
+++ E K PV + K + S+ +G E+ SPA + +E S++ +
Sbjct: 342 LSNGEKKQKPVYTNKKKSNRSGTSSISSSGILES---SPATSISVDEPQKDSKDDSEKVE 398
Query: 353 KETGVKRK 376
KET V+RK
Sbjct: 399 KETEVERK 406
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 173 VTSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 343
+ ++ K+SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 344 TEKKETGVKR 373
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 179 STEPKASPVKXSPAKXVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 343
S P+ SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 344 TEKKE 358
K+E
Sbjct: 233 ESKQE 237
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 230 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 391
+A S+ +E ++E ED+ E+G +E + E+G+ ++ E +++ D
Sbjct: 954 DADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERKARQEDAKHD 1007
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 615 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 508
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 230 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 352
E ES +DE+ +S +E+ ++EE +++ E D +E+
Sbjct: 92 EETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 173 VTSTEPKASPVKXSPAKXVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 337
V++ EP+ PVK + V ++ G+ + TD +P E + S + E G
Sbjct: 390 VSANEPQPRPVK----EDVPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 269 EAPEDSPAENGDAEESNDASENGDATEK 352
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +2
Query: 191 KASPVKXSPAKXVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 346
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 347 EKKETGVKRK 376
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 188 PKAS-PVKXSPAKXVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 358
PK+S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 359 TGV 367
V
Sbjct: 453 DSV 455
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 284 SPAENGDAEESNDASENGDAT 346
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 278 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 379
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,487
Number of Sequences: 5004
Number of extensions: 36451
Number of successful extensions: 160
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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