Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F13
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 215 3e-56
04_04_0143 - 23091613-23092467 200 6e-52
02_04_0362 - 22366668-22367516 200 6e-52
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 184 6e-47
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 173 8e-44
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 94 8e-20
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 32 0.28
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 30 1.1
02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079 27 8.0
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 215 bits (524), Expect = 3e-56
Identities = 100/162 (61%), Positives = 130/162 (80%)
Frame = +2
Query: 86 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 265
S++ VEGGHRAI+FNR+ G++ V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DL
Sbjct: 30 SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89
Query: 266 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 445
QMV I LRVL+RP L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+
Sbjct: 90 QMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREA 149
Query: 446 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVXAKQ 571
VS IR+ L ERA++FNI LDDVS+T LSFGKE+T A+ AKQ
Sbjct: 150 VSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQ 191
>04_04_0143 - 23091613-23092467
Length = 284
Score = 200 bits (488), Expect = 6e-52
Identities = 93/164 (56%), Positives = 124/164 (75%)
Frame = +2
Query: 80 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 259
S S++TV+GG RA++F+R GV EG HF +PW Q P ++DIR+RP SS +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 260 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 439
DLQMVN++LR+LSRPD L T++ LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 440 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVXAKQ 571
VS L+R L+ RA +FNIILDDV++T LS+G E++ AV KQ
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQ 192
>02_04_0362 - 22366668-22367516
Length = 282
Score = 200 bits (488), Expect = 6e-52
Identities = 91/164 (55%), Positives = 126/164 (76%)
Frame = +2
Query: 80 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 259
S +++TV+GG RA++F+R GV +EG HF +PW Q P I+DIR+RP SS +G+K
Sbjct: 30 STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89
Query: 260 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 439
DLQMV+++LRVL+RPD + L ++ LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 90 DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER 149
Query: 440 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVXAKQ 571
VS L+R L+ RAA+FNI+LDDV++T L++G E++ AV KQ
Sbjct: 150 PHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQ 193
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 184 bits (447), Expect = 6e-47
Identities = 88/144 (61%), Positives = 111/144 (77%)
Frame = +2
Query: 140 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 319
G V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185
Query: 320 ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNI 499
T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA +FNI
Sbjct: 186 PTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNI 245
Query: 500 ILDDVSLTELSFGKEYTAAVXAKQ 571
LDDVS+T LSFGKE+T A+ AKQ
Sbjct: 246 ALDDVSITSLSFGKEFTHAIEAKQ 269
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +2
Query: 86 SVFTVEGGHRAIMFNRIGGVQ 148
S++ VEGGHRAI+FNRI G++
Sbjct: 36 SLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 173 bits (421), Expect = 8e-44
Identities = 85/141 (60%), Positives = 109/141 (77%)
Frame = +2
Query: 149 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 328
Q V+ EG F I F+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 329 YRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIILD 508
YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI LD
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 509 DVSLTELSFGKEYTAAVXAKQ 571
DVS+T LSFGKE+T A+ AKQ
Sbjct: 336 DVSITSLSFGKEFTHAIEAKQ 356
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 93.9 bits (223), Expect = 8e-20
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +2
Query: 113 RAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 292
R I N+ + Q + E HF IPWF+ I+D+ RP + S +GS+DLQMV L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 293 LSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 442
L+RP L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI R+
Sbjct: 383 LTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 101 EGGHRAIMFNRI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 229
EGGHR +++ + GG+Q+H++ G +I F IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 323 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 475
T+ +G D+K + N+ K VV + +L+ + VS R+E+V
Sbjct: 51 TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
Query: 476 ERAADFNIILDDVSLTELSFGKE 544
ERAA +I++ + +LS+ E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133
>02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079
Length = 288
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 147 NSTYSPKVCTSVYRGFNTPSFMISDPDLARYLPRLVQKIYRW 272
++ ++ K+ T ++ F TP +ISD + + K+ +W
Sbjct: 78 DARHAKKMFTEIFPRFGTPRMVISDGGAGEWRKMQIAKLEKW 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,796
Number of Sequences: 37544
Number of extensions: 319431
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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