Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F13
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)            183   8e-47
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)                167   6e-42
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_17953| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_16268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    28   6.2  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       27   8.2  

>SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)
          Length = 242

 Score =  183 bits (446), Expect = 8e-47
 Identities = 84/149 (56%), Positives = 112/149 (75%)
 Frame = +2

Query: 80  SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 259
           + ++F V+GGHRA++F+R  GV+  V  EG HF IPW Q PII+DIR+RPR +   TGSK
Sbjct: 24  NSALFNVDGGHRAVIFDRFQGVKPDVVGEGTHFLIPWVQRPIIFDIRTRPRNVPVTTGSK 83

Query: 260 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 439
           DLQ VNI+LR+L RP   +L  +Y  LG DYDE+VLPSI  EVLK+VVA+F+A +LITQR
Sbjct: 84  DLQNVNITLRILYRPQPQVLPKIYMNLGEDYDERVLPSITTEVLKAVVAQFDAGELITQR 143

Query: 440 QQVSLLIRRELVERAADFNIILDDVSLTE 526
           + VS  ++ +L ERA+ F ++LDD+SL E
Sbjct: 144 EMVSQKVQEDLTERASSFGLVLDDISLAE 172


>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
          Length = 500

 Score =  167 bits (406), Expect = 6e-42
 Identities = 82/104 (78%), Positives = 94/104 (90%)
 Frame = +2

Query: 260 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 439
           DLQMVNI LRVL+RP+AN L  MYR+LG D+DE+VLPSI NEVLKSVVA+FNASQLIT R
Sbjct: 357 DLQMVNIGLRVLARPEANKLPPMYRKLGLDFDERVLPSIMNEVLKSVVAQFNASQLITMR 416

Query: 440 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVXAKQ 571
           QQVSLLIRR+L+ERA DF IILDDVS+T+LSFGKEYT+A+ AKQ
Sbjct: 417 QQVSLLIRRQLMERARDFYIILDDVSITDLSFGKEYTSAIEAKQ 460


>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 293 LSRPDANMLATMYRQL-GTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQV 448
           + R  A ++A  Y QL G DYDE   P   +  L+S++A  N   L   +  V
Sbjct: 587 VDRYKARLVAQGYSQLKGVDYDEVFSPVTRSASLRSLLALANVHDLEVHQMDV 639


>SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 516 DTSSRIILKSAARSTNSLLISRDTC*RCVISWEALNLATTDFRTSL 379
           DTS   +L     STNSL    DTC   ++   ++N    D+ TS+
Sbjct: 156 DTSMNSLLHDYDTSTNSLPYDYDTCTHSLLYDISMNSLLYDYDTSM 201


>SB_17953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
 Frame = -1

Query: 232 ARSGSDIINDGVLKPRYTEVHTFGE--------YVLLYSSYSVEHNGTMTSFH 98
           A++GS  I  G+ +PR+  V    +        +  LY+++SV +N T+TS H
Sbjct: 529 AQTGSFKITSGINRPRHVFVWISNDANENSQTVHPFLYNTFSVANNRTLTSCH 581


>SB_16268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
 Frame = -1

Query: 232 ARSGSDIINDGVLKPRYTEVHTFGE--------YVLLYSSYSVEHNGTMTSFH 98
           A++GS  I  G+ +PR+  V    +        +  LY+++SV +N T+TS H
Sbjct: 15  AQTGSFKITSGINRPRHVFVWISNDANENSQTVHPFLYNTFSVANNRTLTSCH 67


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 299 EKVLGGKCLPSVNLLNQSGKISC 231
           E VLG +CL  VN++ Q G + C
Sbjct: 96  ELVLGWRCLNRVNMMYQEGGLKC 118


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 162 PKVCTSVYRGFNTPSFMISDPDLARYLPRLVQKI 263
           P  C SV R F+T    + +P++   + +++QK+
Sbjct: 112 PSCCRSVSRAFDTQGIHVLNPNILDSVRQVIQKV 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,188,644
Number of Sequences: 59808
Number of extensions: 366700
Number of successful extensions: 1335
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)