Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F13
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   260   4e-70
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   188   3e-48
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    31   0.77 
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC024756-7|ABP57814.1|  178|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    27   9.5  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  260 bits (638), Expect = 4e-70
 Identities = 122/164 (74%), Positives = 143/164 (87%)
 Frame = +2

Query: 80  SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 259
           +QS+FTVE GHRAIMFNRIGG+   ++ EG+HFRIPWFQYPIIYDIR+RP +I SPTGSK
Sbjct: 37  AQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSK 96

Query: 260 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 439
           DLQMVNI LRVLSRP+   L  +YR LG +++E+VLPSICNEVLK VVAKFNASQLITQR
Sbjct: 97  DLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQR 156

Query: 440 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVXAKQ 571
           QQVS+L+R+ L+ERA DFNIILDDVSLTEL+F  +Y+AAV AKQ
Sbjct: 157 QQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQ 200


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  188 bits (457), Expect = 3e-48
 Identities = 88/162 (54%), Positives = 120/162 (74%)
 Frame = +2

Query: 86  SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 265
           +++ V+GG RA++F+R  GV+  V  EG HF IPW Q PII+DIRS PR +++ TGSKDL
Sbjct: 29  ALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDL 88

Query: 266 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 445
           Q VNI+LR+L RP  + L  +Y  +G DY E+VLPSI NEVLK+VVA+F+A ++ITQR+ 
Sbjct: 89  QNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREV 148

Query: 446 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVXAKQ 571
           VS      L ERAA F ++LDD+++T L+FG+E+T AV  KQ
Sbjct: 149 VSQRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQ 190


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 165 KVCTSVYRGFNTPSFMISDPDLARYLPRLVQKI 263
           K  T +  GFN PS MISD +L   + R+++ +
Sbjct: 291 KTSTDIIDGFNVPSNMISDDNLPALIYRVIETL 323


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 235 DIFPDWFKRFTDGKHFPPSTFSTRCQYASNNVQTTWN 345
           D  P++  ++ + +  PP   STRC+Y S +V T  N
Sbjct: 405 DTVPNYGLQYQNWEVLPPK-LSTRCEYISEDVATACN 440


>AC024756-7|ABP57814.1|  178|Caenorhabditis elegans Hypothetical
           protein Y34D9A.8b protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 232 ARSGSDIINDGVLKPRYTEVHTFGEYVLLYSSYSVEHNGTMT 107
           AR G+ +  +GV +PR T V      V   ++ + E +GT+T
Sbjct: 73  ARGGAPMAREGVAQPRQTNVQATVAAVKETTTITAESSGTVT 114


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 100 GRRSSCHYVQQNRRSTTARIHRRYALPYTVVSIP 201
           G+R+ C Y   NRR   +       +P TVVS P
Sbjct: 113 GKRAVCIYYDCNRREIPSSRFASRVIPLTVVSCP 146


>Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical
           protein M28.9 protein.
          Length = 861

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 281 KCLPSVNLLNQSGKISCE-VGI*YHK*W 201
           KC P V++ N +G + CE VG+  H  W
Sbjct: 650 KCRPLVDIYNNAGVLVCEQVGLPIHGLW 677


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 326 MYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVE-RAADFNII 502
           +YR L  DY+ +V PS+ ++   +V   F+ +Q+I   ++  +L     +     D+ ++
Sbjct: 3   LYRDLLYDYNNEVRPSVHSKEPINVTFVFSLTQIIDVDERNQILTTNSWIRLHWVDYKLV 62

Query: 503 LD 508
            D
Sbjct: 63  WD 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,634
Number of Sequences: 27780
Number of extensions: 278127
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)