Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F13
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.70 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 178 PYTVVSIPHHL*YQIPT 228
           PY V  +PHHL   +PT
Sbjct: 4   PYHVAQLPHHLSPNMPT 20


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 238 YLARSGSDIINDGVLKP 188
           Y+ RS   ++ DG LKP
Sbjct: 245 YVYRSVDQVLEDGKLKP 261


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 201 PSFMISDPDLARYLPRLVQKIYRW*TFPSEYFLDQMPI 314
           PSF +        +PRL +K  +      + F DQM +
Sbjct: 34  PSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGV 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,572
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)