Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F12
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   115   2e-26
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.67 
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   2.7  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   3.6  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   3.6  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   3.6  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   4.8  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  115 bits (276), Expect = 2e-26
 Identities = 55/88 (62%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
 Frame = +3

Query: 150 FDTNKXICEXIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPE 329
           F  NK +C+ +AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEEERERRDNY+PE
Sbjct: 28  FHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPE 87

Query: 330 VSALEHD---IIEVDPDTKDMLKMLDFN 404
           +S ++      I+VD DT DMLK   FN
Sbjct: 88  ISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 199 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 336
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 217 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 357
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 195 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 311
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 267 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 425
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 195 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 311
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 221 WICHTFNEASQTLASARNLYQTSGRGA 301
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 372 TKDMLKMLDFNNINGLQL 425
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,878,461
Number of Sequences: 27780
Number of extensions: 180453
Number of successful extensions: 555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)