Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F12
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)           113   7e-26
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...   112   2e-25
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...   112   2e-25
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)           111   4e-25
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...   110   6e-25
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    32   0.21 
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    29   2.6  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    29   2.6  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    27   5.9  

>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score =  113 bits (272), Expect = 7e-26
 Identities = 54/97 (55%), Positives = 74/97 (76%)
 Frame = +3

Query: 144 LYFDTNKXICEXIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 323
           L F TNK I E +AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85

Query: 324 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 434
           P+ SA++ D I+VD +T +ML  L  ++ +G+   +P
Sbjct: 86  PDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  112 bits (269), Expect = 2e-25
 Identities = 54/97 (55%), Positives = 73/97 (75%)
 Frame = +3

Query: 144 LYFDTNKXICEXIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 323
           L F TNK I E +AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85

Query: 324 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 434
           P+ SA++ D I+VD +T +ML  L  ++  G+   +P
Sbjct: 86  PDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  112 bits (269), Expect = 2e-25
 Identities = 54/97 (55%), Positives = 73/97 (75%)
 Frame = +3

Query: 144 LYFDTNKXICEXIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 323
           L F TNK I E +AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85

Query: 324 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 434
           P+ SA++ D I+VD +T +ML  L  ++  G+   +P
Sbjct: 86  PDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score =  111 bits (266), Expect = 4e-25
 Identities = 54/97 (55%), Positives = 72/97 (74%)
 Frame = +3

Query: 144 LYFDTNKXICEXIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 323
           L F TNK I E +AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85

Query: 324 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 434
           P+ SA++ D I+VD +T +ML  L  ++  G+    P
Sbjct: 86  PDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score =  110 bits (264), Expect = 6e-25
 Identities = 53/92 (57%), Positives = 72/92 (78%)
 Frame = +3

Query: 144 LYFDTNKXICEXIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 323
           L F TNK I E +AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85

Query: 324 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 419
           P+ SA++ D ++VD +T +ML  L  ++I G+
Sbjct: 86  PDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 231 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 386
           T L+    H +   + I LQ+  +E RR  YVP+ S + HD +E D   +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 433 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 326
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 433 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 326
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 279 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 371
           +K  EEE   R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,290,892
Number of Sequences: 28952
Number of extensions: 164976
Number of successful extensions: 530
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)