Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F11
         (829 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   281   2e-77
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              25   2.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   5.0  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    24   5.0  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   6.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   6.6  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  281 bits (688), Expect = 2e-77
 Identities = 130/242 (53%), Positives = 168/242 (69%)
 Frame = +2

Query: 104 KRLRPSHLVHPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPPP 283
           K++    +V+PLF +R K++ IGQ +QP R LS FV WPKYIRIQR  A+LQ+RLK+PPP
Sbjct: 26  KKVEVKKVVNPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPP 85

Query: 284 INQFTQXLDKXTAKGLFKXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSG 463
           INQFTQ LDK TA+ + K                                  R N +R G
Sbjct: 86  INQFTQTLDKPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQG 145

Query: 464 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTC 643
            N+V K+VE+KKAQLV+IAHDVDPIELV++LPALCRKMGVPYCI+KGK+RLG LV+RKTC
Sbjct: 146 INSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTLVYRKTC 205

Query: 644 TCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIXXXXXXXXR 823
           TC+ALT  E+ D+ + +K+VE IKTNFN+R++++R+HWGGG+LG KS AR+        R
Sbjct: 206 TCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKSMARLAKLEKAKKR 265

Query: 824 EL 829
           E+
Sbjct: 266 EM 267


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 650 SMCMSCGVQVHRGGTC 603
           ++C+ CG + H+ GTC
Sbjct: 572 NVCIRCGQEGHKAGTC 587


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 370  CFXLRPVFLQXLEKALSCXLVQXLGKLVDRRGH 272
            CF  + V ++ +    S   +  L + V RRGH
Sbjct: 1454 CFVTKAVHIELVSNLTSSAFLAALRRFVARRGH 1486


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 650 SMCMSCGVQVHRGGTC 603
           S+C+ CG   HR  +C
Sbjct: 311 SLCLHCGAADHRAASC 326


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 686  SFSKVVEAIKTNFNERYEELRKHWG 760
            +FS+ +     NF+  + EL++ WG
Sbjct: 1855 TFSRTIPFFGGNFSPEHTELQRTWG 1879


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 686  SFSKVVEAIKTNFNERYEELRKHWG 760
            +FS+ +     NF+  + EL++ WG
Sbjct: 1856 TFSRTIPFFGGNFSPEHTELQRTWG 1880


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,378
Number of Sequences: 2352
Number of extensions: 13404
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)