Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F11
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 236 1e-62
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 225 4e-59
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 92 5e-19
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 85 6e-17
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 9e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 1e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 33 0.33
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 4.1
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81035-1|CAB02735.1| 221|Caenorhabditis elegans Hypothetical pr... 28 9.4
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 236 bits (578), Expect = 1e-62
Identities = 110/221 (49%), Positives = 148/221 (66%)
Frame = +2
Query: 131 HPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPPPINQFTQXLD 310
+PLF +R ++F IGQ IQP + ++ FV WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 311 KXTAKGLFKXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 490
+A+ FK L RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 491 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 670
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209
Query: 671 SGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNAR 793
D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+A+
Sbjct: 210 PEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAK 250
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 225 bits (549), Expect = 4e-59
Identities = 110/221 (49%), Positives = 148/221 (66%)
Frame = +2
Query: 131 HPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPPPINQFTQXLD 310
+PLF +R ++F IGQ IQP + ++ FV WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 311 KXTAKGLFKXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 490
+A+ FK L RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRLVE 129
Query: 491 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 670
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 189
Query: 671 SGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNAR 793
D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+A+
Sbjct: 190 PEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAK 230
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 91.9 bits (218), Expect = 5e-19
Identities = 41/71 (57%), Positives = 53/71 (74%)
Frame = +2
Query: 131 HPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPPPINQFTQXLD 310
+PLF +R ++F IGQ IQP + ++ FV WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 311 KXTAKGLFKXL 343
+A+ FK L
Sbjct: 193 SHSARQAFKLL 203
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/60 (61%), Positives = 47/60 (78%)
Frame = +2
Query: 131 HPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPPPINQFTQXLD 310
+PLF +R ++F IGQ IQP + ++ FV WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 625
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 626 VHRKTCTCLALTNVESGDRASFSKVVEAIK 715
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = +2
Query: 449 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 628
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 629 HRKTCTCLALTNVESGDRASFSKVVEAIK 715
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = -1
Query: 406 SFSSFP--QPLFPGCFXLRPVFLQXLEKA-LSCXLVQXLGKLV 287
SF SFP QP+ C ++P F+ +EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 795 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 646
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 795 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 646
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 795 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 646
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 795 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 646
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 795 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 646
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 279 LRSTNLPXHWTXLQLRA 329
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>Z81035-1|CAB02735.1| 221|Caenorhabditis elegans Hypothetical
protein C15H11.1 protein.
Length = 221
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 211 YKAGQGTSWLNALTNGKVLWPLXEERMHEMTWAQPF*PPMGRRRLXARP 65
Y+ GQ T ++ G P E E WA+ + PP G +L P
Sbjct: 73 YRGGQETVPIDRQHFGVYHIPAPENCTCEGAWAEHYGPPQGEHKLRVTP 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,594
Number of Sequences: 27780
Number of extensions: 280677
Number of successful extensions: 740
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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