Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F11
(829 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 248 3e-66
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 247 6e-66
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 1e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 5e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 2e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.033
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.033
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.057
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.057
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.057
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 5.0
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 248 bits (607), Expect = 3e-66
Identities = 119/231 (51%), Positives = 155/231 (67%)
Frame = +2
Query: 101 SKRLRPSHLVHPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPP 280
+K+ + +PLF +RPK F IG + P + LS ++ WPK IR+QRQ +L++RLKVPP
Sbjct: 11 AKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPP 70
Query: 281 PINQFTQXLDKXTAKGLFKXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRS 460
+NQFT+ LDK A LFK L +P ++
Sbjct: 71 ALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKY 129
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKT 640
G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT
Sbjct: 130 GLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKT 189
Query: 641 CTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNAR 793
+CL LT V++ D+ FSK++EAIK NFN++YEE RK WGGG++G+KS A+
Sbjct: 190 ASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAK 240
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 247 bits (605), Expect = 6e-66
Identities = 118/231 (51%), Positives = 154/231 (66%)
Frame = +2
Query: 101 SKRLRPSHLVHPLFXQRPKHFAIGQGIQPTRALSSFVSWPKYIRIQRQXAVLQRRLKVPP 280
+ + +P + +PLF +RPK F IG + P + LS ++ WPK IR+QRQ +L++RLKVPP
Sbjct: 10 ASKKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPP 69
Query: 281 PINQFTQXLDKXTAKGLFKXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRS 460
+NQFT+ LDK A LFK L +P ++
Sbjct: 70 ALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKY 128
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKT 640
G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT
Sbjct: 129 GLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKT 188
Query: 641 CTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNAR 793
L LT V++ D+ FSK++EAIK NFN++YEE RK WGGG++G+KS A+
Sbjct: 189 AAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAK 239
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = +2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 631
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 632 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 751
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 625
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 626 VHRKTCTCLALTNVESGDRASFSKVVEAIK 715
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 625
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 626 VHRKTCTCLALTNVESGDRASFSKVVEAIK 715
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 625
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 626 VHRKTCTCLALTNVESGDRASFSKVVEAIK 715
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 470 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 643
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 644 TCLALTNVESGDRASFSKVVEAIK 715
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 619
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 619
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 619
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 619
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 461 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 619
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 595 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 759
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,678,954
Number of Sequences: 28952
Number of extensions: 271559
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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