Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F10
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   8.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   8.0  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 126 LPWLFDTISVSFAVLVMI 73
           L W + TIS++F + V +
Sbjct: 3   LKWYYITISMAFIIFVSL 20


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 97  HRNGIKKPRKTRHESTLGMDPKFL 168
           HRNG+ +P       TL   P F+
Sbjct: 480 HRNGMYRPSIYFISKTLAESPIFI 503


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 97  HRNGIKKPRKTRHESTLGMDPKFL 168
           HRNG+ +P       TL   P F+
Sbjct: 480 HRNGMYRPSIYFISKTLAESPIFI 503


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,407
Number of Sequences: 336
Number of extensions: 1426
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)