Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F10
(406 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 89 5e-18
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 89 5e-18
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 89 5e-18
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 89 5e-18
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 89 5e-18
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 89 5e-18
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 89 5e-18
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 89 5e-18
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 89 5e-18
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 29 4.5
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 29 4.5
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 29 4.5
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 29 4.5
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 29 4.5
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 29 4.5
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 29 4.5
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 89.0 bits (211), Expect = 5e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 219
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 950 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 989
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 1540 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1579
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 269 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 308
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 404 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 443
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 636 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 675
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 1517 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1556
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 156
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 928 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 967
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,245,007
Number of Sequences: 237096
Number of extensions: 828920
Number of successful extensions: 1898
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -