Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F09
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 112 3e-25
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 95 4e-20
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16) 40 0.002
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 31 1.1
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 30 2.0
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) 29 3.5
SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1) 29 4.6
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 112 bits (269), Expect = 3e-25
Identities = 65/165 (39%), Positives = 87/165 (52%), Gaps = 18/165 (10%)
Frame = +2
Query: 128 LQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQCQ 307
LQ Y YGL +YCMTEYLRMSG+YW LTAM LM + M +E+ I+F+ CQ
Sbjct: 833 LQTPYGYPVPYGLQ----DYCMTEYLRMSGVYWGLTAMALMDKLDMMNREEAIDFVKSCQ 888
Query: 308 DSESGGISASIGHDPHILYTLSAVQVLAMY------------------DRLDAVDIEGIV 433
+ GG AS+ HDPH+LYTLSAVQ L M DRLDA++++ V
Sbjct: 889 -HDDGGFGASVSHDPHLLYTLSAVQSLCMLQWLTLPTLQIVIICSLPKDRLDAINVDKAV 947
Query: 434 RYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDIN 568
Y+V DG F E +C + LS+ L ++++
Sbjct: 948 EYVVDCMNFDGGFGCRPGSESHAGQIYCCLGALSITHSLHHVNVD 992
Score = 89.0 bits (211), Expect = 3e-18
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 18/115 (15%)
Frame = +2
Query: 386 LAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQ------- 544
+A+ D+LD ++ E + ++ S Q +DG F + ++ AV L +LQ
Sbjct: 866 MALMDKLDMMNREEAIDFVKSCQHDDGGFGASVSHDPHLLYTLSAVQSLCMLQWLTLPTL 925
Query: 545 -----------RLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTL 676
RLDAI+++K VE+V+ CMNFDGGFG +PGSESHAG IYCC+G L
Sbjct: 926 QIVIICSLPKDRLDAINVDKAVEYVVDCMNFDGGFGCRPGSESHAGQIYCCLGAL 980
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 512 FCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESH 643
+ + ++L+ +LD ++ + ++FV SC + DGGFG+ + H
Sbjct: 860 YWGLTAMALMDKLDMMNREEAIDFVKSCQHDDGGFGASVSHDPH 903
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 95.5 bits (227), Expect = 4e-20
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Frame = +2
Query: 50 AIE*KFKMSFTTKDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWS 229
A+E K ++ + V+ D L+ QKH +Y+ + D C+ + R YW
Sbjct: 29 AVELKIAKNYYSYLAVMDLDPEIPLIRQKHLNYVRRGLVRLSDSYECL-DASRPWLCYWM 87
Query: 230 LTAMELMGQSSRMPK-EDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRL 406
L +++L+G+ + + DI+ F+ +CQ E GG PH+ T +AV +L +
Sbjct: 88 LHSLKLLGEEVPLQQVSDIVGFLRRCQHPE-GGFGGGPNQVPHLAPTYAAV-ILGTEEAY 145
Query: 407 DAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFV 586
+ +D + +I+ + DG F GE+D R ++CA + S+ L T +++
Sbjct: 146 NVIDRPALYNFIMRCRNLDGGFRMHVDGEVDIRGAYCAAVSASITNILTPELFAGTADWL 205
Query: 587 LSCMNFDGGFGSKPGSESHAGLIYC 661
SC ++GGF +PG E+H G +C
Sbjct: 206 KSCQTYEGGFSGEPGLEAHGGYTFC 230
Score = 36.3 bits (80), Expect = 0.023
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +2
Query: 281 IIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQQE 460
+ FI +C++ + GG + + I A ++ + L G ++ S Q
Sbjct: 153 LYNFIMRCRNLD-GGFRMHVDGEVDIRGAYCAAVSASITNILTPELFAGTADWLKSCQTY 211
Query: 461 DGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLS-CMNFDGGF 616
+G F G+ E ++FC CL LL + +++ + + + ++ M +GGF
Sbjct: 212 EGGFSGEPGLEAHGGYTFCGFACLVLLGKEHIVNLKQLLRWAVNRQMKAEGGF 264
>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
Length = 713
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 353 HILYTLSAVQVLAMY-DRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMC 529
HI T +A+ +L + D L ++ I+ + LQ EDGSF + W
Sbjct: 97 HIAMTYTALAMLLILGDDLSRINRPAIIEGLRHLQLEDGSFILNDWS------------- 143
Query: 530 LSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTL 676
I+I K V+++ + ++D G P ESH G +C + +L
Sbjct: 144 --------GINIEKAVQYIRNSQSYDYGIAQGPHLESHGGSTFCAIASL 184
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 413 VDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLS 592
++IE V+YI + Q D E +FCA+ LSL+ +LD + +E ++
Sbjct: 145 INIEKAVQYIRNSQSYDYGIAQGPHLESHGGSTFCAIASLSLMNQLDKVFTKSQLEKLIR 204
Query: 593 CMNF--DGGFGSKP 628
F GF +P
Sbjct: 205 WCIFRQKSGFHGRP 218
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 518 AVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHA 646
AV+ S L +L I KTV +L+ M +GGF ++P HA
Sbjct: 120 AVVASSTLHKLIEASITKTVPTILANMLINGGFVAQPTFLPHA 162
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +2
Query: 71 MSFTTKDVVLKEDRPKTLLLQKHSDYLASYGLNKD--DYEYCMTEYLRMSG---IYWSLT 235
M +D V+ E + + Y +Y +D D E E +R S I WS T
Sbjct: 1742 MELCVRDSVVGEQARERIRRLWEPTYTITYREARDPNDQELLDREKVRESSESPIQWSST 1801
Query: 236 AMELMGQSSRMPKEDIIEFITQCQDS 313
ME + +PK ++I F+ Q D+
Sbjct: 1802 YMEHCLGTDELPKSEVIAFLQQHADT 1827
>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
Length = 526
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -2
Query: 659 SKLDQHGFPIQVWNRIHHQSSCN*AQT 579
S+L QHG ++++N IHH+ + N AQT
Sbjct: 244 SRLGQHGH-VRLYNTIHHRPTGNAAQT 269
>SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 134 KHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAM 241
KHS Y GLN DY YC+T+ +S + + L +M
Sbjct: 34 KHSSY-TKLGLN--DYGYCVTKMFALSNLIFLLLSM 66
>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
Length = 570
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -2
Query: 497 LFHPICL-----HKNYHLLAVRKLCI*QFLQYQQHLIYHTSPVPVQH 372
L H +C ++N+ + KLC LQY+ H Y+TS V H
Sbjct: 236 LLHKLCYCVALQYRNHCHYLLHKLCYCVALQYRSHCHYYTSCATVWH 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,014
Number of Sequences: 59808
Number of extensions: 427544
Number of successful extensions: 1050
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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