Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F08
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 122 4e-29
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 46 7e-06
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 35 0.013
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 29 0.84
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 28 1.1
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 1.5
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 5.9
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 5.9
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 7.9
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 122 bits (295), Expect = 4e-29
Identities = 53/126 (42%), Positives = 83/126 (65%)
Frame = +3
Query: 168 EQKVGVNRVYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKW 347
E+ GV+++Y+FL L+L +G L+ N + F PA+ S+ A+E+ K DDT+W
Sbjct: 28 EKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQW 87
Query: 348 LTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQ 527
LTY++V + +++EY+S I+ + P+YWLLK IF+IW LP ++NG+ +IY +IRPY
Sbjct: 88 LTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFLIWLALP-KFNGATIIYRHLIRPYIT 146
Query: 528 KHHGRI 545
H RI
Sbjct: 147 PHVIRI 152
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +3
Query: 327 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYR 506
+++ + + YW VY C + E + W P Y K +F +W P G+ IY
Sbjct: 97 EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155
Query: 507 IIRPYYQKHHGRIDD 551
I P+ H I++
Sbjct: 156 YISPFLSDHKAAINN 170
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 34.7 bits (76), Expect = 0.013
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = +3
Query: 228 LYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW--VVYACFSIVEYFSD 401
L LVFG LI IGF+ Y + +E PQ W T + +++ C I++
Sbjct: 654 LILVFG----LIYFIIGFLVYKYELIYQMEHPQHSTGELWSTIFLRMIFGCV-IMQLTMM 708
Query: 402 FIVGWFPLYWLLKCIFVIWCY-LPTEYNGSLVI--YYRIIRPYYQKHH 536
++ YWL IF + C+ + + YN S +I + + YY + H
Sbjct: 709 GLMSLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTH 756
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 253 APKPNTKYKPVNATKPKKMYTLFTPTFCSASS 158
A K +KYKP+N KP + + PT S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = +3
Query: 177 VGVNRVYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTY 356
+G+ R +F L ++ + G ++ ++P+ +S AL D+D
Sbjct: 207 IGIGRAILF-NLCSYLSSFGWSGLALPILVYPPTLIWPSVLSSCALFKIFHDNDNTKACN 265
Query: 357 WVVYAC-FSIVEYFSDFIVGWFP--LYWLLKCI--FVIWC 461
W + + + + + FI WFP ++ L + ++ WC
Sbjct: 266 WTISRLRYFFIVFVASFIWYWFPDLIFPALSSLGAWISWC 305
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = -3
Query: 644 LFKCLXESCHCFINRFIEVFNDIIHGICVGHIIDTTMVLLVVRTNDTVVD 495
+ KCL ++ R +++ N+I++ + I+ T M+ L+V ++++ V+
Sbjct: 332 ILKCLVDTDTSIRLRALDLVNEIVNKENIRTIVKTLMLQLIVSSDESAVE 381
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 372 CFSIVEYFSDFIVGWFPLYWLLKC 443
C ++EYF F + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 5.9
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Frame = -1
Query: 262 INSAPKPNTKYKP-----VNATK--PKKMYTLFTPTFCSASSKYXVHGXXXXXXXXXXLA 104
+N KP TKYKP V TK PK + T A + Y +G
Sbjct: 280 VNITQKPKTKYKPLPLSTVELTKLGPKHLRISAKKTLELAENLY-TNGFVSYPRTETDQF 338
Query: 103 *DDXNLDAIVRXLSGEPNVXARXEVERAKKHRP 5
NL AI++ L+G + E A +RP
Sbjct: 339 DSSMNLHAIIQKLTGAQEWDSYAEGLLAGDYRP 371
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 354 YWVVYACFSIVEY--FSDFIVGWFPLYWLLKCIFVIWCYLP 470
Y Y FSI + FSDF++ YW+ + + W Y P
Sbjct: 146 YGYFYLFFSIALFLLFSDFLI-----YWIHRALHHRWLYAP 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,348
Number of Sequences: 5004
Number of extensions: 57217
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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