Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F08
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 171 5e-43
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 58 9e-09
SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36) 31 0.67
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 31 1.2
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 2.7
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 28 6.2
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10) 28 8.3
SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2) 28 8.3
SB_45400| Best HMM Match : MAM (HMM E-Value=0) 28 8.3
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 171 bits (416), Expect = 5e-43
Identities = 70/127 (55%), Positives = 96/127 (75%)
Frame = +3
Query: 168 EQKVGVNRVYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKW 347
E+K V ++Y+FLGLV LYL+FG+GA+LI +GF YPAY S+KA+ES QKDDDT+W
Sbjct: 33 EEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFAYPAYQSVKAVESVQKDDDTQW 92
Query: 348 LTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQ 527
L YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ WC P +NGS +Y ++I+P+
Sbjct: 93 LIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCMAPVSWNGSDTLYQKVIKPFVL 152
Query: 528 KHHGRID 548
+H +ID
Sbjct: 153 RHQSQID 159
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +3
Query: 189 RVYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW 359
R+ + L +V FT LY+ G+ A CN I V+P Y S+ A+E+P + TKWL YW
Sbjct: 55 RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENPDYEIGTKWLMYW 110
>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
Length = 436
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 26 LNFRSCVHIRFATQXPH-NGIQIXIVSSQHXTKSERQ 133
+NF+SCV +RF T + +G + + QH T ER+
Sbjct: 220 INFKSCVRLRFCTVLEYCDGNDLDFLLKQHKTVPERE 256
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 283 TKPIELHINSAPKPNTKYKPVNATKPKKMYTLFTPTFCSA 164
T+P+ H S+P+P + + PVN T P TP +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -3
Query: 524 VVRTNDTVVDHQGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHDRKTGVHHPICKP 345
+V +VV HQ PVV R H+ + V +P ++H T V HP +P
Sbjct: 1381 IVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHSHDTYVSHPFFEP 1437
Query: 344 F 342
F
Sbjct: 1438 F 1438
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 372 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 500
C ++V +G F +++ +C CY+P + NGS IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 361 TQYVSHFVSSSFCGDSRAFIDMYAGYTK 278
T +V HFV + FCG++R+ + + + +
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNR 801
>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 442 HFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELH 263
+F+++ N T +EKYST + Y+T+ + + + S + Y+ TK E +
Sbjct: 208 NFSTKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYS--TKATEKY 265
Query: 262 INSAPKP-NTKYKPVNATKPKKMYT 191
A + +TK +TK K Y+
Sbjct: 266 STKATENFSTKATENYSTKATKNYS 290
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 294 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 446
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356
>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 294 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 446
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170
>SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)
Length = 98
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 188 QSVHFLRLGRVHRFIFSVRFRS*INMQLDRLRVPRVHVYEGSGVAAEG*RYKMA 349
Q H+L L R+HR +V ++M+ D Y VAAE +Y+++
Sbjct: 40 QGEHWLGLDRIHRLTNAVASELRVDMEADAGETAHAQ-YSHFSVAAESDKYRLS 92
>SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 188 QSVHFLRLGRVHRFIFSVRFRS*INMQLDRLRVPRVHVYEGSGVAAEG*RYKMA 349
Q H+L L R+HR +V ++M+ D Y+ VAAE +Y+++
Sbjct: 138 QEEHWLGLDRIHRLTNAVASELRVDMEADAGETAHAQ-YDHFSVAAETDKYRLS 190
>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
Length = 273
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -1
Query: 457 QITKMHFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTK 278
Q+ + N N+ K KYS+ +Q Y ++ VSS F F Y T+
Sbjct: 137 QMVEFVITGNPNENKTHGKWPKYSSENRQVYQAAFIESGVSSDFLAQKADFWTRYLPQTE 196
>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
Length = 257
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 441 CIFVIWCYLPTEYNGSLVIYYRIIRP 518
C+ + CY + YN + +YY +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,729,731
Number of Sequences: 59808
Number of extensions: 440553
Number of successful extensions: 1597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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