Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F06
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    25   0.57 
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    25   0.57 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.2  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 102



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 178



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 254



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 294 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 330



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 370 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 406



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 446 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 482



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 522 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 558



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 598 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 634


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 38  TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 74


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 279 YDWFVLKIVLF 247
           Y WFVLK V+F
Sbjct: 138 YFWFVLKQVMF 148


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
          neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 5  RPLXPSPSNFLQNLSFQI 58
          RP+ P P N++ +  F +
Sbjct: 33 RPMLPYPQNYINSYLFSL 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,066
Number of Sequences: 336
Number of extensions: 2334
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)