Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_F06
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3360| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   1e-06
SB_15543| Best HMM Match : DUF1311 (HMM E-Value=6.2)                   28   6.0  

>SB_3360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/101 (28%), Positives = 48/101 (47%)
 Frame = +3

Query: 366 KDIVNILKTKTSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQA 545
           +D    ++   S ++  L +L+       + +   + V   LR ++  LTG++I  Q +A
Sbjct: 60  RDYAKAIQKYDSNTLHCLRSLRKAFAQGSELISAFMGVENGLRSVVGYLTGHNIDLQLEA 119

Query: 546 AGCICNLALGDSRAGVAVTKSAGPYLIAALDNLTTELAVRC 668
           A CI NL+ G     + V K+A PYLI  L      L  +C
Sbjct: 120 AWCITNLSAGTHEDTLRVLKAAAPYLITYLSGQNLSLQDQC 160


>SB_15543| Best HMM Match : DUF1311 (HMM E-Value=6.2)
          Length = 163

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 504 RELTGNDIAKQCQAAGCICNLALGDSRA 587
           R L G D  K+ + A CI +L+ GD R+
Sbjct: 73  RNLLGCDAVKKLREASCIFDLSFGDERS 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,874
Number of Sequences: 59808
Number of extensions: 294186
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)