Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F06
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family pr... 33 0.23
At2g39220.1 68415.m04817 patatin family protein similar to patat... 29 2.8
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 29 2.8
At4g29800.1 68417.m04243 patatin-related low similarity to patat... 29 3.8
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 28 5.0
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra... 28 6.6
At4g26670.1 68417.m03842 mitochondrial import inner membrane tra... 28 6.6
At2g36380.1 68415.m04464 ABC transporter family protein related ... 28 6.6
>At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 612
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = +3
Query: 405 SVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSR 584
+V+E+ +L D+R ++++ GA+ L+ LT D+A Q A C+ NL++ ++
Sbjct: 351 AVSEIRSLSKRSTDNR----ILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENN 406
Query: 585 AGVAVTKSAGPYLIAALDNLTTE 653
+ + A ++ L T E
Sbjct: 407 KELIMFAGAVTSIVQVLRAGTME 429
>At2g39220.1 68415.m04817 patatin family protein similar to
patatin-like latex allergen [Hevea
brasiliensis][PMID:10589016]; contains patatin domain
PF01734
Length = 499
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 280 TNCYYIDVN*EMKNPTAGALTLVFHPK 360
T C +D M NPTA A+T V H K
Sbjct: 295 TRCVAVDGGLAMSNPTAAAITHVLHNK 321
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 456 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 566
T+ LVL + G ++ ++ LTG I + +++G I N+
Sbjct: 217 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSGTIDNV 253
>At4g29800.1 68417.m04243 patatin-related low similarity to patatin
precursor [Solanum brevidens][GI:563125]; contains
Patatin domain PF01743
Length = 525
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 280 TNCYYIDVN*EMKNPTAGALTLVFHPK 360
T C + M NPTA A+T VFH K
Sbjct: 319 TRCVAVGGGLAMSNPTAAAITHVFHNK 345
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 280 TNCYYIDVN*EMKNPTAGALTLVFHPK 360
T+C +D M NPTA A+T V H K
Sbjct: 215 TSCSAVDGGLVMNNPTAAAVTHVLHNK 241
>At5g55510.1 68418.m06914 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q99595 Mitochondrial import inner
membrane translocase subunit TIM17 A {Homo sapiens};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 186
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 453 KTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVAVTKS-----AGP 617
KT ++ V+ + L++++ G D A AGC LAL A A+ +S A
Sbjct: 61 KTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAMLQSCLTFGAFS 120
Query: 618 YLIAALDNLTTELA 659
+++ L+ T LA
Sbjct: 121 FILEGLNKRQTALA 134
>At4g26670.1 68417.m03842 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q9Z0V8 Mitochondrial import inner
membrane translocase subunit TIM17 A {Mus musculus};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 210
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 453 KTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVAVTKS-----AGP 617
KT ++ V+ + L++++ G D A AGC LAL A A+ +S A
Sbjct: 89 KTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQALLQSCLTFGAFS 148
Query: 618 YLIAALDNLTTELA 659
+++ L+ T LA
Sbjct: 149 FILEGLNKRQTALA 162
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 285 IGYDWFVLKIVLFRLPFK*CFVY 217
IGYDW V+K F CFVY
Sbjct: 1302 IGYDWTVVKFFWFYYYMLTCFVY 1324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,731,099
Number of Sequences: 28952
Number of extensions: 196846
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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