Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F05
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 188 3e-48
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 185 3e-47
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 174 4e-44
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 174 4e-44
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 174 4e-44
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 174 5e-44
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 67 8e-12
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 67 1e-11
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 65 3e-11
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 64 1e-10
At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] syntha... 30 1.6
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 29 2.7
At5g48120.1 68418.m05944 expressed protein low similarity to MMS... 29 3.6
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-... 29 3.6
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.8
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.8
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 28 6.3
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 188 bits (458), Expect = 3e-48
Identities = 97/192 (50%), Positives = 123/192 (64%), Gaps = 2/192 (1%)
Frame = +3
Query: 90 MAAFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEV 269
MA S V+ +V I RTPM + AA++RA + ++EV
Sbjct: 1 MAHTSESVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEV 60
Query: 270 YIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIIL 449
GNV SANLGQAPARQA + AG+P S ICTTVNKVCASGMK++M+AAQ +Q G D+++
Sbjct: 61 VFGNVLSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVV 120
Query: 450 AGGMESMSNVPFYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQIT 623
AGGMESMSN P YL R + +G LVDG++ DGL DVYN MG+CAE A+K QIT
Sbjct: 121 AGGMESMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQIT 180
Query: 624 XQDQDEYAVNSY 659
+ QD+YAV S+
Sbjct: 181 REQQDDYAVQSF 192
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 185 bits (450), Expect = 3e-47
Identities = 94/185 (50%), Positives = 120/185 (64%), Gaps = 2/185 (1%)
Frame = +3
Query: 111 VSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCS 290
V ++V I RTPM + AA++RA + ++EV GNV S
Sbjct: 3 VDESDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNVLS 62
Query: 291 ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESM 470
ANLGQAPARQA + AG+P S ICTTVNKVCASGMK++M+AAQ +Q G D+++AGGMESM
Sbjct: 63 ANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGMESM 122
Query: 471 SNVPFYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEY 644
SN P YL R + +G LVDG++ DGL DVYN MG+CAE A+K QIT + QD+Y
Sbjct: 123 SNTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDDY 182
Query: 645 AVNSY 659
AV S+
Sbjct: 183 AVQSF 187
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 174 bits (424), Expect = 4e-44
Identities = 87/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
Frame = +3
Query: 123 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 302
+V + RTP+ + AA++RA + ++EV+ GNV +ANLG
Sbjct: 14 DVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVLTANLG 73
Query: 303 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 482
QAPARQA + AG+P S ICTT+NKVCA+GMKS+MLA+Q +Q G DI++AGGMESMSNVP
Sbjct: 74 QAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVP 133
Query: 483 FYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNS 656
YL R + G +VDG++ DGL DVYN F MG C E A + +IT ++QD YA+ S
Sbjct: 134 KYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQS 193
Query: 657 Y 659
+
Sbjct: 194 F 194
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 174 bits (424), Expect = 4e-44
Identities = 87/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
Frame = +3
Query: 123 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 302
+V + RTP+ + AA++RA + ++EV+ GNV +ANLG
Sbjct: 14 DVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVLTANLG 73
Query: 303 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 482
QAPARQA + AG+P S ICTT+NKVCA+GMKS+MLA+Q +Q G DI++AGGMESMSNVP
Sbjct: 74 QAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVP 133
Query: 483 FYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNS 656
YL R + G +VDG++ DGL DVYN F MG C E A + +IT ++QD YA+ S
Sbjct: 134 KYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQS 193
Query: 657 Y 659
+
Sbjct: 194 F 194
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 174 bits (424), Expect = 4e-44
Identities = 87/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
Frame = +3
Query: 123 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 302
+V + RTP+ + AA++RA + ++EV+ GNV +ANLG
Sbjct: 14 DVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVLTANLG 73
Query: 303 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 482
QAPARQA + AG+P S ICTT+NKVCA+GMKS+MLA+Q +Q G DI++AGGMESMSNVP
Sbjct: 74 QAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVP 133
Query: 483 FYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNS 656
YL R + G +VDG++ DGL DVYN F MG C E A + +IT ++QD YA+ S
Sbjct: 134 KYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQS 193
Query: 657 Y 659
+
Sbjct: 194 F 194
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 174 bits (423), Expect = 5e-44
Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Frame = +3
Query: 123 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 302
+V + RTP+ + AA++RA + ++EV+ GNV +ANLG
Sbjct: 14 DVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVLTANLG 73
Query: 303 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 482
QAPARQA + AG+P S ICTT+NKVCA+GMKS+MLA+Q +Q G DI++AGGMESMSNVP
Sbjct: 74 QAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVP 133
Query: 483 FYL---KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVN 653
YL R + G +VDG++ DGL DVYN F MG C E A + +IT ++QD YA+
Sbjct: 134 KYLPDASRRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQ 193
Query: 654 SY 659
S+
Sbjct: 194 SF 195
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 67.3 bits (157), Expect = 8e-12
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 2/182 (1%)
Frame = +3
Query: 120 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 296
++VVI +A RTP+ V A IE+ + E+ ++ +G V +
Sbjct: 50 DDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPG 109
Query: 297 LGQAP-ARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 473
+A R A +AG P++ TVN+ C+SG++++ A ++ G DI + G+ESM+
Sbjct: 110 SQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Query: 474 NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVN 653
P ++ G V+ V MG +EN A++ ++ Q+QD+ AV+
Sbjct: 170 TNPM-------AWEGS--VNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVD 220
Query: 654 SY 659
S+
Sbjct: 221 SH 222
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 66.9 bits (156), Expect = 1e-11
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 3/214 (1%)
Frame = +3
Query: 27 PVSNSNIXXXXXXXXXXXXTAMAAFSTKVSL-NEVVIASAVRTPMXXXXXXXXXXXXXXX 203
PVS+SN ++ S + +++VI +A RT +
Sbjct: 17 PVSSSNSSLKHEPSLLSPVNCVSEVSPMAAFGDDIVIVAAYRTAICKARRGGFKDTLPDD 76
Query: 204 XXXXV-NAAIERAGIPKEEIKEVYIGNVCSANLGQA-PARQAVIFAGLPKSTICTTVNKV 377
V A +ER + E+ ++ +G V + +A R A FAG P S TVN+
Sbjct: 77 LLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQ 136
Query: 378 CASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLT 557
C+SG++++ A ++ G DI + G+ESMS ++ G + D F
Sbjct: 137 CSSGLQAVADVAASIRAGYYDIGIGAGVESMST--DHIPGGGFHGSNPRAQD---FPKAR 191
Query: 558 DVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSY 659
D MG +EN A++ +T ++QD AV S+
Sbjct: 192 DCL--LPMGITSENVAERFGVTREEQDMAAVESH 223
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 65.3 bits (152), Expect = 3e-11
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Frame = +3
Query: 120 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 296
+++VI +A RT + V A +ER + E+ ++ +G V +
Sbjct: 6 DDIVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGTVIAPG 65
Query: 297 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 473
+A R A FAG P S TVN+ C+SG++++ A ++ G DI + G+ESMS
Sbjct: 66 SQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMS 125
Query: 474 NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVN 653
++ G + D F D MG +EN A++ +T ++QD AV
Sbjct: 126 T--DHIPGGGFHGSNPRAQD---FPKARDCL--LPMGITSENVAERFGVTREEQDMAAVE 178
Query: 654 SY 659
S+
Sbjct: 179 SH 180
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 63.7 bits (148), Expect = 1e-10
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 2/182 (1%)
Frame = +3
Query: 120 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 296
++VVI +A RT + V A IE+ + E+ ++ +G V
Sbjct: 42 DDVVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPG 101
Query: 297 LGQAP-ARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 473
+A R A +AG P++ TVN+ C+SG++++ A ++ G DI + G+ESM+
Sbjct: 102 SQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 161
Query: 474 NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVN 653
P RG + G + F+ + MG +EN A + ++ ++QD+ AV+
Sbjct: 162 TNP----RG---WKGSVNPNVKKFEQAHNCL--LPMGITSENVAHRFNVSREEQDQAAVD 212
Query: 654 SY 659
S+
Sbjct: 213 SH 214
>At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] synthase
II, putative similar to Swiss-Prot:P56902
3-oxoacyl-[acyl-carrier-protein] synthase II (EC
2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II)
[Rhizobium meliloti]
Length = 461
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 378 CASGMKSIMLAAQGLQTGAQDIILAGGMES 467
CA+G SI A + +Q G D+++AGG ES
Sbjct: 209 CATGAHSIGDATRMIQFGDADVMVAGGTES 238
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 275 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCLWHEIYNVG--STRSTNWS 433
W C C GP TSC I + Y +N ++ + H Y++ S RS ++S
Sbjct: 523 WYCSSCNDGP----TSCKIATASWLYTYFNLNANILVLHSAYSLSPISDRSHDFS 573
>At5g48120.1 68418.m05944 expressed protein low similarity to MMS19
[Mus musculus] GI:14029390
Length = 1152
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 336 GLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYG 515
GLP I ++VC++G K + QGL+ + +ES FYL+ G
Sbjct: 605 GLPYQMILEATSEVCSTGPKYVEKMVQGLEEAFCSSLSDFYIESFLVSNFYLETTCQVNG 664
Query: 516 GMQLVD 533
+ +D
Sbjct: 665 NFESID 670
>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 707
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 447 LAGGMESMSNVPFYLKRGETSYGGMQLVD 533
+AGG+E + N LKRG ++GG VD
Sbjct: 44 VAGGLEKVGNNFVGLKRGRDTFGGSSEVD 72
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -1
Query: 550 PSNTIPSTNC-IPPYEVSP 497
PS+T PS+NC PPY+ SP
Sbjct: 49 PSHTPPSSNCGSPPYDPSP 67
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -1
Query: 550 PSNTIPSTNC-IPPYEVSP 497
PS+T PS+NC PPY+ SP
Sbjct: 49 PSHTPPSSNCGSPPYDPSP 67
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 428 WSPRYNTCWWDGIYVKC 478
W+ RY+TC DG YV C
Sbjct: 284 WTLRYSTCLEDGSYVVC 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,782
Number of Sequences: 28952
Number of extensions: 263213
Number of successful extensions: 715
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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