Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_F04
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 324 4e-89
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 323 8e-89
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 320 7e-88
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 62 2e-10
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 62 2e-10
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 35 0.057
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.30
At4g00450.1 68417.m00062 expressed protein 30 1.6
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 3.8
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 3.8
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 5.0
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 8.7
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.7
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 8.7
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 324 bits (795), Expect = 4e-89
Identities = 146/207 (70%), Positives = 174/207 (84%)
Frame = +2
Query: 56 MGRVXRAQRKGAGSVFVSHTKKXKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 235
MGRV RAQRKGAGSVF SHT KG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 236 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 415
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 416 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 595
GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180
Query: 596 KAGRAYHKYKVKRNCWPYVRGVAMNPV 676
KAG AYHKY+VKRN WP VRGVAMNPV
Sbjct: 181 KAGNAYHKYRVKRNSWPKVRGVAMNPV 207
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 323 bits (793), Expect = 8e-89
Identities = 144/207 (69%), Positives = 173/207 (83%)
Frame = +2
Query: 56 MGRVXRAQRKGAGSVFVSHTKKXKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 235
MGRV RAQRKGAGSVF SHT KG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 236 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 415
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 416 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 595
GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180
Query: 596 KAGRAYHKYKVKRNCWPYVRGVAMNPV 676
KAG AYHKY+VKRNCWP VRGVAMNPV
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNPV 207
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 320 bits (785), Expect = 7e-88
Identities = 144/208 (69%), Positives = 173/208 (83%), Gaps = 1/208 (0%)
Frame = +2
Query: 56 MGRVXRAQRKGA-GSVFVSHTKKXKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 232
MGRV RAQRKGA GSVF SHT KG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 233 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 412
V FR P+++ +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120
Query: 413 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 592
+GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPF 180
Query: 593 LKAGRAYHKYKVKRNCWPYVRGVAMNPV 676
LKAG AYHKYK KRNCWP VRGVAMNPV
Sbjct: 181 LKAGNAYHKYKAKRNCWPVVRGVAMNPV 208
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/109 (35%), Positives = 60/109 (55%)
Frame = +2
Query: 347 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 526
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 527 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNP 673
+ + R +G V+ K + KAG++ ++ R P VRGVAMNP
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNP 161
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/109 (35%), Positives = 60/109 (55%)
Frame = +2
Query: 347 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 526
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 527 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNP 673
+ + R +G V+ K + KAG++ ++ R P VRGVAMNP
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNP 161
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 34.7 bits (76), Expect = 0.057
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 497 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA-MNP 673
+ LP +KK + S R M+G +A G + K K +KRN W VRGVA MNP
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAMMNP 430
Query: 674 V 676
V
Sbjct: 431 V 431
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 406 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 248
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 418 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 242
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 241 VYNSQRCTSTRVMDYILNN 185
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +2
Query: 353 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 520
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 521 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 616
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -1
Query: 616 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 440
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 439 TCQTTSITHF-LFKIAHNGTLRHSSN 365
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 565 WRWTY*QTYFESWKGIPQVQG 627
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 621 YLWYALPAFKIGL 583
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 457 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 344
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -2
Query: 564 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 385
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 384 PSGIAPTGITFPTSRVAFF 328
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,757
Number of Sequences: 28952
Number of extensions: 340158
Number of successful extensions: 922
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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