Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E24
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   242   3e-65
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   242   3e-65
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.0  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.0  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  242 bits (592), Expect = 3e-65
 Identities = 113/151 (74%), Positives = 128/151 (84%)
 Frame = +3

Query: 114 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 293
           N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA
Sbjct: 7   NPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIA 66

Query: 294 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 473
            H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG+D
Sbjct: 67  CHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 126

Query: 474 FYVVLGRPGFNVXHXRRKTGKVGFPHRLTKE 566
           FYVV+ RPG  V   + + G+VG+ H++  E
Sbjct: 127 FYVVMDRPGMRVARRKAQRGRVGYTHKINAE 157


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  242 bits (592), Expect = 3e-65
 Identities = 113/151 (74%), Positives = 128/151 (84%)
 Frame = +3

Query: 114 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 293
           N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA
Sbjct: 7   NPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIA 66

Query: 294 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 473
            H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG+D
Sbjct: 67  CHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 126

Query: 474 FYVVLGRPGFNVXHXRRKTGKVGFPHRLTKE 566
           FYVV+ RPG  V   + + G+VG+ H++  E
Sbjct: 127 FYVVMDRPGMRVARRKAQRGRVGYTHKINAE 157


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 273 GYQKTALYT*PWKIQAVVL*VAPTPWRHESA 181
           G     +Y   W I A +L V P PWR+ S+
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSS 151


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 132 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 275
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,101
Number of Sequences: 5004
Number of extensions: 45450
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)