Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E24
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 258 3e-69
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 257 4e-69
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 1.0
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 2.4
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 28 5.5
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 5.5
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 28 5.5
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 28 5.5
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 27 7.2
U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical p... 27 9.5
U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 258 bits (631), Expect = 3e-69
Identities = 121/154 (78%), Positives = 135/154 (87%)
Frame = +3
Query: 114 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 293
NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIA
Sbjct: 17 NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIA 76
Query: 294 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 473
VHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+D
Sbjct: 77 VHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMD 136
Query: 474 FYVVLGRPGFNVXHXRRKTGKVGFPHRLTKEXAM 575
FYVVL R G + RR G+VG HR+ +E ++
Sbjct: 137 FYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESI 170
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 257 bits (630), Expect = 4e-69
Identities = 121/151 (80%), Positives = 132/151 (87%)
Frame = +3
Query: 114 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 293
NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIA
Sbjct: 17 NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIA 76
Query: 294 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 473
VHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+D
Sbjct: 77 VHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMD 136
Query: 474 FYVVLGRPGFNVXHXRRKTGKVGFPHRLTKE 566
FYVVL R G V RR G++G HR+ KE
Sbjct: 137 FYVVLNRNGVRVSKRRRAPGRIGPSHRVDKE 167
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 303 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 461
++R AEE+ RG + Y E+RR TG FG G + + I + S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 404 AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 267
AK+ + G ++ PQ FS+F+ + FF + T+ N I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 365 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 276
++ DF+ +KDFF C SD T S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
Y76A2B.1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 370 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTXGVRQEKWDFP 549
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 550 TASQRXM 570
T S R M
Sbjct: 1006 TPSSRNM 1012
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 320 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 219
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 370 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTXGVRQEKWDFP 549
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 550 TASQRXM 570
T S R M
Sbjct: 1006 TPSSRNM 1012
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 370 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTXGVRQEKWDFP 549
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 550 TASQRXM 570
T S R M
Sbjct: 1006 TPSSRNM 1012
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 311 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 198
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 365 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 255
++ DF+T +K+FF + T S+ +TT K H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336
>U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical
protein T28A11.4 protein.
Length = 90
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 297 GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 163
G+Q+FH++G +K A WK V P+ ++ S+ +IHQ
Sbjct: 51 GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89
>U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical
protein F47C12.7 protein.
Length = 185
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 353 DFQTPLKDFFCFSSSDCTMDSNLFITTDTK 264
DF T +F CF S DC+ D+ + T K
Sbjct: 61 DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,721
Number of Sequences: 27780
Number of extensions: 257248
Number of successful extensions: 673
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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