Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E22
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 74  QTFPHFLSRMYINYG 118
           Q+F HF+ +M IN+G
Sbjct: 887 QSFNHFVLKMGINHG 901


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 512 KNKQSYYATDYVDKDYG 562
           KNK      DY D DYG
Sbjct: 106 KNKDGDDNNDYEDNDYG 122


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 55  HDNQNFNKKDFXFYN 11
           H+N N+N  ++  YN
Sbjct: 91  HNNNNYNNNNYNNYN 105


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 287 NYAPSDSEDGYSE 325
           NY   DSE GY E
Sbjct: 538 NYVVPDSEHGYDE 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,132
Number of Sequences: 438
Number of extensions: 2479
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)