Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E20
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 228 3e-61
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 2.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 3.8
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 3.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 5.1
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 6.7
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 8.9
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 228 bits (558), Expect = 3e-61
Identities = 102/144 (70%), Positives = 125/144 (86%)
Frame = +3
Query: 84 FLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 263
FLFTSESVGEGHP K+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 264 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 443
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 444 MFGYATDETEECMPLTVXLAHKLN 515
MFGYATDET E +PLT+ LAHKLN
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLN 148
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.3
Identities = 38/144 (26%), Positives = 63/144 (43%)
Frame = -1
Query: 499 SXTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 320
S + + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 319 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 140
SS P + S +T S + S S+ ++S ++ +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 139 WSHILXG*PSPTDSDVNKNTDPAS 68
S P+ T S ++ ++ +S
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 120 PXKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 224
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 356 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 231
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 252 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 371
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 387 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 268
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 301 ICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRC 164
I L++ TF + LD++ HK+ P +V A F GS F C
Sbjct: 351 IRLSLEEATFNQIIMELDIL--HKAVSPYIVDFYGAFFVEGSVFIC 394
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 87 LFTSESVGEGHPXKMCDQI--SDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSK 254
LF S + ++ D + D ILD Q A CET + + ++ EITS+
Sbjct: 45 LFDSSEYFQNFSFQVNDDLLGKDVILDISNQQLTPAVPGCETSSNSKLISASKEITSE 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,121
Number of Sequences: 5004
Number of extensions: 46307
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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