Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E20
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 197 5e-51
01_03_0090 - 12347165-12348349 193 6e-50
01_02_0051 - 10655867-10657057 192 1e-49
12_02_0655 + 21588662-21589051 31 0.73
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 0.73
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 2.9
11_01_0446 + 3462820-3464265 27 8.9
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 27 8.9
>05_01_0264 + 2030080-2031270
Length = 396
Score = 197 bits (480), Expect = 5e-51
Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +3
Query: 66 MEAGSVFLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEI 245
M A FLFTSESV EGHP K+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEI
Sbjct: 1 MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEI 60
Query: 246 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 419
T+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 420 VGAGDQGLMFGYATDETEECMPLTVXLAHKL 512
+GAGDQG MFGYATDET E MPL+ LA KL
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKL 151
>01_03_0090 - 12347165-12348349
Length = 394
Score = 193 bits (471), Expect = 6e-50
Identities = 92/149 (61%), Positives = 113/149 (75%), Gaps = 2/149 (1%)
Frame = +3
Query: 72 AGSVFLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITS 251
A FLFTSESV EGHP K+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+
Sbjct: 2 AAETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITT 61
Query: 252 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVG 425
KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+G
Sbjct: 62 KATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 121
Query: 426 AGDQGLMFGYATDETEECMPLTVXLAHKL 512
AGDQG MFGYATDET E MPL+ LA KL
Sbjct: 122 AGDQGHMFGYATDETPELMPLSHVLATKL 150
>01_02_0051 - 10655867-10657057
Length = 396
Score = 192 bits (469), Expect = 1e-49
Identities = 91/145 (62%), Positives = 115/145 (79%), Gaps = 2/145 (1%)
Frame = +3
Query: 84 FLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 263
FLFTSESV EGHP K+CDQISDA+LDA L +DP++KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANV 66
Query: 264 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 437
DY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 438 GLMFGYATDETEECMPLTVXLAHKL 512
G MFGYATDET E MPL+ LA KL
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKL 151
>12_02_0655 + 21588662-21589051
Length = 129
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 32 WIRANQRTQLXYGSWISIFVHIGICWRGSSXQNVRPNKRRYSRRASESGSGRK 190
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 192 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 353
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 192 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 353
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>11_01_0446 + 3462820-3464265
Length = 481
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 266 IHVSFGCDFATQKHHTGFSYGFTCNFCVRILIQMRV*NSVAYL 138
+ +SF DF KH F+ GF CVR+L+ + + + +YL
Sbjct: 316 VELSFLQDFFYSKHADVFASGFP---CVRLLLSLLMTAAASYL 355
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +3
Query: 75 GSVFLFTSESVGEGHPXKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 236
GS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 767 GSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,591
Number of Sequences: 37544
Number of extensions: 326427
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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