Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E20
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 252 2e-67
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 231 2e-61
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 8e-45
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 3e-37
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 82 3e-16
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 51 5e-07
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.43
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 0.56
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 29 3.0
SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0) 27 6.9
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14) 27 6.9
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 252 bits (616), Expect = 2e-67
Identities = 115/146 (78%), Positives = 129/146 (88%)
Frame = +3
Query: 78 SVFLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 257
+ FLFTSESVGEGHP KMCDQISDAILDAHL QDP+AKVACET+ KTGM+LLCGEITS A
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNA 88
Query: 258 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQ 437
VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH R +E+VGAGDQ
Sbjct: 89 VVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEEDVGAGDQ 148
Query: 438 GLMFGYATDETEECMPLTVXLAHKLN 515
GLMFGYATDETEE MPLTV LAHK+N
Sbjct: 149 GLMFGYATDETEELMPLTVVLAHKMN 174
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 231 bits (566), Expect = 2e-61
Identities = 109/143 (76%), Positives = 119/143 (83%)
Frame = +3
Query: 84 FLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 263
FLFTSESV EGH KMCDQISDA+LDAHL QDP AKVACET TKTG+VLL GEITS A V
Sbjct: 52 FLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFGEITSNARV 111
Query: 264 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 443
DYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH NR D+E+GAGDQGL
Sbjct: 112 DYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDEIGAGDQGL 171
Query: 444 MFGYATDETEECMPLTVXLAHKL 512
MFGYATDETEE MPLT LAHKL
Sbjct: 172 MFGYATDETEELMPLTTVLAHKL 194
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 176 bits (429), Expect = 8e-45
Identities = 78/104 (75%), Positives = 94/104 (90%)
Frame = +3
Query: 204 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 383
++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2 SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61
Query: 384 AAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVXLAHKLN 515
A GVH R+DE++GAGDQGLMFGYATDET+E MPLTV LAH LN
Sbjct: 62 AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLN 105
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 151 bits (366), Expect = 3e-37
Identities = 67/82 (81%), Positives = 76/82 (92%)
Frame = +3
Query: 78 SVFLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 257
+ FLFTSESVGEGHP KMCDQISDAILDAHL QDP+AKVACE++ KTGM+++CGEITS A
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLA 68
Query: 258 NVDYQKVVRETVKHIGYDDSSK 323
NVDYQKVVR+T+K IGYDDSSK
Sbjct: 69 NVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +3
Query: 78 SVFLFTSESVGEGHPXKMCDQISDAILDAHLNQDPDAKVAC 200
+ FLFTSESVGEGHP KMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +3
Query: 414 EEVGAGDQGLMFGYATDETEECMPLTVXLAHKL 512
E+ GAGDQGLMFGYAT+ET+ MP V AH+L
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRL 40
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 237 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 338
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 459 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 361
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 205 VSHATFASGS*FRCASRIASLIWSHILXG 119
+S + A + FRC+ R S++W H+ G
Sbjct: 287 ISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)
Length = 654
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 507 CVQAXQSTACILLSHLLHNRTSSP--GLLPQLP-RHFCSHA 394
CV A +S + SH+ HN++S P L Q P R C+H+
Sbjct: 381 CVFAKESCRTWMQSHVAHNKSSEPFCYTLKQAPLRMRCTHS 421
>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
Length = 334
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 420 LPRHFCSHAPQQQCLVIVGLVRASHCMSCNQSL-WTNHHN 304
L R FC +C+ I+G R S+ + W HH+
Sbjct: 106 LSRLFCERLDSNECVFIIGAQRFSNYTGYAHTFKWAGHHD 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,617
Number of Sequences: 59808
Number of extensions: 391234
Number of successful extensions: 1051
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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