Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E19
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 35 0.050
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 33 0.20
SB_5550| Best HMM Match : BofA (HMM E-Value=3.3) 31 0.82
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 31 0.82
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 29 2.5
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 29 2.5
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22) 29 3.3
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 29 3.3
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 28 5.8
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24) 28 7.6
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 35.1 bits (77), Expect = 0.050
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +2
Query: 152 QTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALN-APKRK- 325
QT+ S TS + +S +S+R ++ + + TS K R +L +PK
Sbjct: 63 QTSPKTSRKTSKKTSQKTSLNASRKTSRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSP 122
Query: 326 RVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMK 436
+ P+ TSS T P + P T P TSS+ ++K
Sbjct: 123 EIGPRTSPKTSSKTSPKTSPKSSPKTSPKTSSKTSLK 159
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 146 STQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKR- 322
S +TN S TSS ++ +S T S + + TS K SR T+LNA ++
Sbjct: 8 SLKTNLKTSRKTSSKTSLKTSPKTRRKKSPKTTPKTSLKTSRKTSLKTSRKTSLNASRKT 67
Query: 323 -KRVEPKR*LVTSSTTKPNS 379
++ KR L T+ T P +
Sbjct: 68 SRKTSLKRSLKTNPKTSPKT 87
>SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)
Length = 203
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 450 AFEFSFIFLCELVGGIVFGLQLLPEFGFVVDEVTNHLFG 334
AF F + LV G+VFGL P FG V V +FG
Sbjct: 90 AFRLVFGLVLRLVFGLVFGLVFWPVFGLVFGLVFGLVFG 128
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 31.1 bits (67), Expect = 0.82
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Frame = +2
Query: 152 QTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALN-APKRK- 325
QT S TS ++ +S T +S + ++ + TSRK R + N +PKR
Sbjct: 95 QTTPKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRSP 154
Query: 326 --------RVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNS 445
+ PK L TSS T P + + T TS +R++K ++
Sbjct: 155 KTSSKSSPKTSPKTSLKTSSKTSPKTSLNTSRKTSRKTSLKRSLKTST 202
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/99 (23%), Positives = 40/99 (40%)
Frame = +2
Query: 128 PSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTAL 307
PS +T TT ++ ++ T T + S+K+ PQ ++++P+
Sbjct: 230 PSTKQPTTTQQTTTTLPSTKQPTTTQQTTTTLPSTKQPTTPQLTTTTFPSTKQPTTTQQT 289
Query: 308 NAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQ 424
A +P T TT S +P T+ PT+ Q
Sbjct: 290 TATLPSTKQPT---TTQQTTATLPTPSTKPTTVSPTTRQ 325
>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 301 CAKC---TKAQKGGTEKMIGHLINHEAEFWEELKAK 399
C KC +G T +I HL NH + +EE K
Sbjct: 51 CKKCFAVVATSRGNTSNLIAHLRNHHPDLYEEFNTK 86
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 233 KRANVPQKARNLNLTSRKPSRPTALNAPKRK--RVEPKR*LVTSSTTKPNSGRS*RPNTI 406
K + + +LN SRK SR T+L + + PK + S T P + P T
Sbjct: 319 KTSRKTSQKTSLN-ASRKTSRKTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEISPRTS 377
Query: 407 PPTSSQRNMK 436
P TSS+ + K
Sbjct: 378 PKTSSKTSPK 387
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 233 KRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPP 412
+R+N+PQ ++N S+ P+ P + + K P + + P+ RS + PP
Sbjct: 282 RRSNLPQPSKNHASRSQSPAPPRGRSLKRSKSPAPGS-AAAARSRSPSPARS--STSTPP 338
Query: 413 TSSQRNMKL 439
T S KL
Sbjct: 339 TISSVKTKL 347
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 211 PYVHCILEKGQCTAEGKELKSHIKEALETNCAKCTKAQKGGTEKMIGH--LINHEAEFWE 384
PY ++ + A+G L SH+KE L T+ C G E + H L E ++
Sbjct: 961 PYSPYLIAEYIHVAQGVHLPSHVKEVL-TDGVFCLLDLCGDHETALLHATLSKGSRELFK 1019
Query: 385 ELKAKYDPTNEFTKK 429
L +Y+ ++FT K
Sbjct: 1020 TLNEEYNKYHKFTGK 1034
>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
Length = 834
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -1
Query: 591 FIIPITYFRRHFEKKMCVELKIKSTKYINLIT*Y*AVSLF---QRNLSCNAFEFSFIFLC 421
++IP + R C + + YINL +++L QR CN+F+ SF+ +C
Sbjct: 439 YVIPSSASHRLCADSHCNCFSMSNNLYINLSAFLCSIALHLSAQRCCLCNSFKRSFVLVC 498
Query: 420 EL 415
L
Sbjct: 499 VL 500
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = +2
Query: 224 ASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNT 403
A ++ P+K+R+ T + + +PK K+ + K ++ TTK + +S + +
Sbjct: 115 AEEEKVKKPKKSRDGEKTKKSKKVTSEPKSPKVKKSKDK----STKTTKKSDAKSPKKDA 170
Query: 404 IPPTSSQRNMKLNSNA 451
PT++++ K A
Sbjct: 171 KSPTTTKKTSKTTKTA 186
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = +2
Query: 218 YIASSKRANVPQ-KARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*R 394
Y+ +R V + K R +P R + PK T T+P + R
Sbjct: 230 YLTGRRRGRVTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTR 289
Query: 395 PNTIPPTSSQRNMK 436
P T P T S+ K
Sbjct: 290 PKTRPKTKSKSKSK 303
>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
Length = 347
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 241 QCTAEGKELKSHIKEALETNCAKCTKAQKGGT 336
Q E + L+ +EA T C KC+ A++G +
Sbjct: 149 QMREEKRYLRDMSREAATTGCVKCSSARRGSS 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,141,505
Number of Sequences: 59808
Number of extensions: 421395
Number of successful extensions: 1174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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