Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E19
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50027-2|CAA90335.1| 188|Caenorhabditis elegans Hypothetical pr... 31 0.54
AF043702-3|AAK21496.2| 474|Caenorhabditis elegans Hypothetical ... 29 2.9
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 29 3.8
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 29 3.8
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 29 3.8
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 6.7
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 6.7
Z77136-9|CAI91180.1| 474|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z77136-7|CAD54177.1| 472|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z77136-6|CAB00883.1| 488|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z50027-2|CAA90335.1| 188|Caenorhabditis elegans Hypothetical
protein C39B10.3 protein.
Length = 188
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 337 EKMIGHLINHEAEFWEELKAKYDPTNEFTKKYETELKRVTA 459
E+M+ L++ ++ EEL+ K D + TK+YE EL++V A
Sbjct: 81 EEMLTFLVDASKKYDEELEEKRDENKKATKEYE-ELEKVAA 120
>AF043702-3|AAK21496.2| 474|Caenorhabditis elegans Hypothetical
protein W03D8.1 protein.
Length = 474
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 128 PSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTAL 307
P+ A + T T TT T + T + T + S+K + + L T++KP +P
Sbjct: 230 PTTATDPTTTTTTTEATTVTSTTTPAETTTAMKSTKEQVLTTTRKALE-TTKKPEKPEKP 288
Query: 308 NAPKR 322
P+R
Sbjct: 289 EKPER 293
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 212 PTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS 388
P + + + VP+ + T+R P+R T P+ K V + TSS P+ +S
Sbjct: 626 PASVIAPSSSVVPKSQPRPSPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSPSQS 684
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 28.7 bits (61), Expect = 3.8
Identities = 29/109 (26%), Positives = 47/109 (43%)
Frame = +2
Query: 104 PACLVRLWPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSR 283
P +V + PS +T T TT + T+ T T S+ P+ ++ L +
Sbjct: 309 PRVIVTIPPSTTSTTTSTTTTTTTTTTEEPT------TTTTSAPTTTTPEPSKYPPLPPQ 362
Query: 284 KPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRN 430
RP ++ KR++ PK+ V TK SG RP + ++S N
Sbjct: 363 I-YRPRPIDQMKRRKQTPKKCRVAYVRTK--SGSRTRPVLVCDSASAAN 408
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.8
Identities = 29/109 (26%), Positives = 47/109 (43%)
Frame = +2
Query: 104 PACLVRLWPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSR 283
P +V + PS +T T TT + T+ T T S+ P+ ++ L +
Sbjct: 384 PRVIVTIPPSTTSTTTSTTTTTTTTTTEEPT------TTTTSAPTTTTPEPSKYPPLPPQ 437
Query: 284 KPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRN 430
RP ++ KR++ PK+ V TK SG RP + ++S N
Sbjct: 438 I-YRPRPIDQMKRRKQTPKKCRVAYVRTK--SGSRTRPVLVCDSASAAN 483
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 103 ACLPCTAVALARPEQYTDKYDTVDLD-QLISNRRLLIPYV--HCILEKGQCTAEGKELKS 273
+C P V P+ D+ + + Q++S + +P C +E+ E ++
Sbjct: 437 SCQPLVPVVAYFPKPLKDEGKGIRIQFQVMSELNIGLPLSCSECNIEEFHSVVE---IEE 493
Query: 274 HIKEALETN--CAKCTKAQKGGTEKMIGH 354
H KE E N C KC K GTE M+ H
Sbjct: 494 HFKEKHEANHTCIKCGKT--FGTEFMLKH 520
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 103 ACLPCTAVALARPEQYTDKYDTVDLD-QLISNRRLLIPYV--HCILEKGQCTAEGKELKS 273
+C P V P+ D+ + + Q++S + +P C +E+ E ++
Sbjct: 437 SCQPLVPVVAYFPKPLKDEGKGIRIQFQVMSELNIGLPLSCSECNIEEFHSVVE---IEE 493
Query: 274 HIKEALETN--CAKCTKAQKGGTEKMIGH 354
H KE E N C KC K GTE M+ H
Sbjct: 494 HFKEKHEANHTCIKCGKT--FGTEFMLKH 520
>Z77136-9|CAI91180.1| 474|Caenorhabditis elegans Hypothetical
protein ZC376.7c protein.
Length = 474
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 347 LVTSSTTKPNSGRS*RPNTIPPTSS 421
L+TSST+ P+SG S IPP SS
Sbjct: 251 LMTSSTSSPDSGISLYDPMIPPPSS 275
>Z77136-7|CAD54177.1| 472|Caenorhabditis elegans Hypothetical
protein ZC376.7b protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 347 LVTSSTTKPNSGRS*RPNTIPPTSS 421
L+TSST+ P+SG S IPP SS
Sbjct: 249 LMTSSTSSPDSGISLYDPMIPPPSS 273
>Z77136-6|CAB00883.1| 488|Caenorhabditis elegans Hypothetical
protein ZC376.7a protein.
Length = 488
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 347 LVTSSTTKPNSGRS*RPNTIPPTSS 421
L+TSST+ P+SG S IPP SS
Sbjct: 265 LMTSSTSSPDSGISLYDPMIPPPSS 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,338
Number of Sequences: 27780
Number of extensions: 323288
Number of successful extensions: 997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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