Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E18
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   273   2e-74
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.46 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   5.7  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   5.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.9  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  273 bits (669), Expect = 2e-74
 Identities = 126/189 (66%), Positives = 154/189 (81%)
 Frame = +2

Query: 92  LQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEF 271
           LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F
Sbjct: 3   LQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKF 62

Query: 272 RKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIP 451
            +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ 
Sbjct: 63  AERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVA 122

Query: 452 FRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKP 631
           FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI  
Sbjct: 123 FRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI-- 180

Query: 632 DTKAAXEYF 658
           DTK   +YF
Sbjct: 181 DTKNPEKYF 189


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 556 LHQPQGLLHRPPHGQVVDRDL-PEVLLVVDDEESSEGNARLLVQ 428
           L Q Q L  +    ++ D DL PEV  ++ +EES  G +R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 482 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEV 589
           +NL++I +  LPVG  +++   LR V     T K+G++
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDI 129


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 349 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 513
           +A R+  H H +   +   H  R  S   G  HS   +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
 Frame = -1

Query: 552  TSRRVSSTDLPTGRSLIVICLRFCLSSMM---KSPRKGMPVSSSSTP*--SREMRCDLSL 388
            TS  V +T  P   S +V       SS +    +P     V ++STP   S  +     +
Sbjct: 1153 TSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPI 1212

Query: 387  IRGMFMGPSPPCLRG-VLIQARCVKCESV---EAPSTSQPILRNSSAFSENAMISVGHTN 220
                 +  S P     VL  +  +   S+     P TS  +L +S+  + + +++   T 
Sbjct: 1213 TSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVN-SSTP 1271

Query: 219  VKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 118
            + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1272 ITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 107 PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 238
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +2

Query: 89  PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 229
           P+ + KPA      +T  V     DI+L D  G           K +V+F YP   T  C
Sbjct: 30  PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89

Query: 230 PTEIIAFSEKADEFRKIGCEVLGASTDS 313
             +   F +   + +    EVLG S D+
Sbjct: 90  TKQGCGFRDNYPKIQASDYEVLGLSFDT 117


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 618 LAPGLQLAGHTSPCLSVNW 562
           L P  +L  HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 356 GGLGPMNIPLISDKS 400
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,561
Number of Sequences: 5004
Number of extensions: 39564
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)