Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E18
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 136 2e-32
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 91 5e-24
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 91 6e-19
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 81 6e-16
06_01_0671 - 4899611-4899829,4900870-4901448 71 1e-12
02_01_0691 - 5167260-5167937 41 8e-04
01_03_0105 + 12604125-12604583 31 0.63
07_03_0575 - 19637277-19637681 29 2.6
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 2.6
07_03_1139 + 24254662-24255306 29 3.4
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 29 4.5
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 29 4.5
01_06_0813 - 32165310-32165546,32165691-32165783,32166075-321662... 29 4.5
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014... 28 5.9
07_01_0478 - 3605306-3605614,3605766-3605906 28 5.9
02_03_0183 + 16106205-16106474 28 5.9
02_02_0154 + 7263707-7263782,7263908-7264248 28 5.9
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 24 6.5
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 28 7.8
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 136 bits (328), Expect = 2e-32
Identities = 62/115 (53%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Frame = +2
Query: 317 FTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQ 496
F+HLAW+ T RK GGLG + PLISD + IS+ +GVL + GI RGLFIID + ++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 497 ITINDLPVGRSVEETLRLVQAFQFT-DKHGEVCPANWRPGAKTIKPDTKAAXEYF 658
TIN+L +GRSV+ET+R +QA Q+ D EVCPA W+PG K++KPD K + EYF
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYF 326
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/69 (65%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +2
Query: 110 APQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 286
AP F A AV + EF ++ LSDY GK YV+LFFYPLDFTFVCPTEI AFS++ DEF K+
Sbjct: 74 APDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNT 133
Query: 287 EVLGASTDS 313
E+LG S DS
Sbjct: 134 EILGVSIDS 142
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 90.6 bits (215), Expect(2) = 5e-24
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Frame = +2
Query: 422 GVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH-GEVCPA 598
GV + GI RGLFIID + ++ TIN+L +GRSV+ETLR +QA Q+ ++ EVCPA
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132
Query: 599 NWRPGAKTIKPDTKAAXEYF 658
W+PG K++KPD K + EYF
Sbjct: 133 GWKPGEKSMKPDPKDSKEYF 152
Score = 38.3 bits (85), Expect(2) = 5e-24
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 221 FVCPTEIIAFSEKADEFRKIGCEVLGASTDS 313
FV EI AFS++ +EF KI EVLG S DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 91.5 bits (217), Expect = 6e-19
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Frame = +2
Query: 158 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 334
I + D+ G YV+LF +P DFT VC TE+ A + A EF K G ++LG S D +H W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 335 INTPRKQGGLGPMNIPLISDKSHRISRDYGVLD----EETG--IPFRGLFIIDDKQNLRQ 496
I + P+++D S + ++D + G +P R L I+ + ++
Sbjct: 117 IKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVKL 176
Query: 497 ITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKP 631
+ VGR+++E +R V A Q KH P NW+PG + + P
Sbjct: 177 SFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 81.4 bits (192), Expect = 6e-16
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Frame = +2
Query: 158 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 334
I L D+ G YV++F +P DFT VC TE+ + A EF K G ++LG S D +H W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 335 INTPRKQGGLGPMNIPLISDKSHRISRDYGVLD---EETG---IPFRGLFIIDDKQNLRQ 496
I + P+++D R ++D ++T +P R L I+ + ++
Sbjct: 82 IKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVKL 141
Query: 497 ITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKP 631
+ GR++ E LR A +H P NW+PG + + P
Sbjct: 142 SFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIP 186
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/135 (31%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Frame = +2
Query: 158 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWI 337
+SLS +KG+ VV++FYP D T C + AF + ++F+K G EV+G S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 338 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG-IPFRGLFIIDDKQNLRQITINDL 514
+K+ L P L+SD+ +++ +++GV + G +P R +++D ++ I N
Sbjct: 196 ---KKKYKL-PFT--LLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNNQF 249
Query: 515 PVGRSVEETLRLVQA 559
+ + ETL+++Q+
Sbjct: 250 QPEKHIGETLKILQS 264
>02_01_0691 - 5167260-5167937
Length = 225
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +2
Query: 140 NGEFKDISLSDYK-GKYVVLFFYPLDFTFVCPTEII-AFSEKADEFRKIGCEVLGA-STD 310
+GE K +++++ G+ VLF P FT C + + F EKA E G + + S +
Sbjct: 81 DGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVN 140
Query: 311 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGV 427
F AW ++ GLG ++ L+SD + ++R GV
Sbjct: 141 DAFVMRAW----KESLGLGDADVLLLSDGNLELTRALGV 175
>01_03_0105 + 12604125-12604583
Length = 152
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 370 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 516
H+H Q +P +LR GR DG H RRQ Q + +PA
Sbjct: 63 HQHKLFYSQPSPPRAKLRLVGRIDGRKEEAAHHSRRQPSLQKEAAAKPA 111
>07_03_0575 - 19637277-19637681
Length = 134
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -1
Query: 396 LSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTSQPILRNSSAFSENAMISVGHT 223
+ + G P C R V + K ESV A + +L N F NA VG T
Sbjct: 49 IKFLSNKLSGHEPTCKRIVAVGTGSSKSESVVAVDKVESMLCNLDRFEANAQHEVGPT 106
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 347 RKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITI 505
+K+ G G N+P D R ++DY +DE+ +P F I D++ + + +
Sbjct: 65 KKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVIL 117
>07_03_1139 + 24254662-24255306
Length = 214
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Frame = +1
Query: 334 DQHAAQAGRTRPHEHSSDKRQVAPHLPRLR---------SAGRGDGHSLPRTLHHRRQAE 486
D A +T P H D PHLP L +AG P HHR ++
Sbjct: 140 DSSALCCPKTPPPAHRPDPATAVPHLPPLGRDPSPSPLPTAGENSTSPTPEREHHRGESP 199
Query: 487 PQADHDQRPA 516
A +RPA
Sbjct: 200 ADAFLARRPA 209
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 657 KYSWAALVSGLMVLAPGLQ 601
KY W A+ G MVL PGL+
Sbjct: 370 KYRWKAIKGGTMVLGPGLR 388
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = -1
Query: 459 PRKGMPVSSSSTP*SREMRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTSQ- 283
P P +ST S D + RG+ G PP L C++C SV A +
Sbjct: 369 PSAAAPTGFASTDRSGGAGRDRAFARGICFGDPPPALS----PQYCLRCLSVAAKELADG 424
Query: 282 -PILRNSSAFSENAMISVGHTNVKS 211
P R ++ +++ S T+ S
Sbjct: 425 CPAKRRAAVWTDGCFASFADTSALS 449
>01_06_0813 -
32165310-32165546,32165691-32165783,32166075-32166218,
32166685-32166771,32166858-32167077,32167879-32168039
Length = 313
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 577 LVRELEGLHQPQGLLHRPPHGQVVDRDLPEVLL 479
+VRE E LHQ G P DLPE LL
Sbjct: 117 MVRETEKLHQQVGRYKSPDEHPFFPEDLPEPLL 149
>12_01_1057 -
10899871-10899961,10900255-10900411,10901420-10901498,
10901618-10901707,10903232-10903486,10903674-10903689,
10903907-10903940,10905653-10905884
Length = 317
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 657 KYSWAALVSGLMVLAPGLQ 601
KY W + G MVL PGLQ
Sbjct: 286 KYRWKVIKGGKMVLCPGLQ 304
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 430 GRGDGHSLPRTLHHR 474
G DGH LPRTL HR
Sbjct: 4 GGDDGHGLPRTLSHR 18
>02_03_0183 + 16106205-16106474
Length = 89
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 380 PLISDKSHRISRDYGVLDEETGIP 451
PL S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
>02_02_0154 + 7263707-7263782,7263908-7264248
Length = 138
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 450 GMPVSSSSTP*SREMRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTS 286
G+ +S +T S + C LSL + PS CL+ A + C + AP S
Sbjct: 25 GVIATSKATSKSYKAACTLSLATCLPSLPSDKCLKAAFAAATSLLCLTAGAPPPS 79
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 23.8 bits (49), Expect(2) = 6.5
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 334 DQHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQ 507
DQH + T SS + + P LPR R S +T+H + +A Q
Sbjct: 203 DQHGRGSTATAASSASSPELRPMPPLPRQFQQTRTSMPSTSQTIHEAGAEDKRAPPPQ 260
Score = 22.6 bits (46), Expect(2) = 6.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 193 AVLLSFGLHVRVPDGDHRVLGEG 261
AVLLS G + DGDH G G
Sbjct: 186 AVLLSPGNSTALYDGDHDQHGRG 208
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 541 GLLHRPPHGQVVDRDLPEVLLVVDDEESSEGNARLLVQHSVVAGDAVRLVAYQRNVHG 368
G+L +G+VVD L + ++DD E +L +H A +R + R+V G
Sbjct: 841 GVLESNENGRVVDAVLGALCTLMDDAVDVERGVAVLAEHD-AARHVLRALRQHRDVGG 897
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,813
Number of Sequences: 37544
Number of extensions: 314505
Number of successful extensions: 1204
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -