Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E18
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 280 8e-76
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 158 3e-39
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 2e-30
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06) 45 5e-05
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 31 0.84
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5) 28 6.0
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11) 28 7.9
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 280 bits (686), Expect = 8e-76
Identities = 127/174 (72%), Positives = 147/174 (84%), Gaps = 1/174 (0%)
Frame = +2
Query: 104 KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKI 280
KPAP F TAV +GEF D+ LSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++ DEF+ I
Sbjct: 55 KPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFKAI 114
Query: 281 GCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRG 460
CEV+ S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RG
Sbjct: 115 NCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRG 174
Query: 461 LFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 622
LFIIDDK LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 175 LFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 158 bits (384), Expect = 3e-39
Identities = 71/95 (74%), Positives = 83/95 (87%)
Frame = +2
Query: 338 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 517
N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLFIIDDK LRQITINDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 518 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 622
VGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 63 VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 129 bits (312), Expect = 2e-30
Identities = 56/80 (70%), Positives = 69/80 (86%)
Frame = +2
Query: 95 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 274
Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114
Query: 275 KIGCEVLGASTDSHFTHLAW 334
I EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = +2
Query: 458 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 580
GLFIIDDK LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175
>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/47 (72%), Positives = 38/47 (80%)
Frame = +2
Query: 518 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAXEYF 658
VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG TI PD +YF
Sbjct: 1 VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47
>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
Length = 160
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Frame = +2
Query: 296 GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 448
G S D +H W+ K N P+I+D+ ++ G++D + G+
Sbjct: 3 GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62
Query: 449 PF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPG 613
P R +FII + L+ + GR+ +E LR++ + Q T P +W+ G
Sbjct: 63 PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLG 119
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 386 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 556
+ DKS R + LD+ GI G ++ + N+ +ITIN+ + ++ TL V
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194
Query: 557 AFQFTDKHG 583
F F+DKHG
Sbjct: 195 EFSFSDKHG 203
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +1
Query: 346 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 519
+ AG + +R+ A H PR+ G G+ HS+P + +P + P +
Sbjct: 18 SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRK 75
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +1
Query: 337 QHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 516
QH+ T P + SS +Q PH P R R T H+ + PQ+ A
Sbjct: 784 QHSESVSETSP-QLSSTAQQTPPHSPATRHNARTSSPQSLATRHNAWTSSPQSPATLHNA 842
Query: 517 R 519
R
Sbjct: 843 R 843
>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +1
Query: 349 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 519
Q GR RP++H V H PR R R S P + R H + R
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPR 203
>SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)
Length = 380
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 565 VHGQARRGVPRQLEARRQDHQARHQGRPXVLRRRQ 669
VH + R+G +L + + R QG+ VLR RQ
Sbjct: 262 VHPRPRQGTDVRLPLQLHQREVRRQGKATVLRYRQ 296
>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 580 RRGVPRQLEARRQDHQARHQGRPXVLRR 663
RR +PR LE +RQ Q R R +LRR
Sbjct: 299 RRRIPRLLEQQRQIRQQRLPERLAILRR 326
>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
Length = 334
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 392 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 511
D ++ Y V+D+ET I GL I +K+N +++ T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 352 AGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPR 459
+G+ P SSD R L LRS G +SLPR
Sbjct: 399 SGKEGPMSDSSDLRAALKELAYLRSIQTGGEYSLPR 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,542
Number of Sequences: 59808
Number of extensions: 341655
Number of successful extensions: 1438
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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