Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E17
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    74   2e-14
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    56   5e-09
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    34   0.018
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   0.88 
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    28   1.2  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   4.7  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
 Frame = +2

Query: 71  FPAGKVPAFXSADGKVLLTESNAIAYYVANXS----LRGGXLATQARVWQWASWSDSELL 238
           FP  K+P F   DG   L+E+ AIA+Y+A+ +    L G     +A+V Q+ S+++SEL 
Sbjct: 47  FPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSELP 105

Query: 239 PASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFST 418
            A    + P +    +++Q  + A++ +       D  L ++T+LV  R+TLAD+     
Sbjct: 106 GAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCF 165

Query: 419 LLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAP 556
           L     +VL  S  +   ++ R++ T+ HQ ++ A+   L     P
Sbjct: 166 LKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQP 211


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
 Frame = +2

Query: 71  FPAGKVPAFXSADGKVLLTESNAIAYYVA----NXSLRGGXL--ATQARVWQWASWSDSE 232
           FP  K+P F  ADG  L      + Y+      N     G +    +A + +W  + + +
Sbjct: 47  FPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFD 106

Query: 233 LL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVI 406
           ++ P +   WV  + G + + ++  + + +  + +LK+ +  +  RT+LV +R TLAD+ 
Sbjct: 107 IVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLF 166

Query: 407 VFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 517
             S L   F  ++D   R  L ++ R+++T+ HQ ++
Sbjct: 167 FGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 341 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 517
           LD  L + TF+  +  I++AD+ V++ + H++   L       L NV RWF  + HQ  V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186

Query: 518 SAVVGSLTL 544
                S+++
Sbjct: 187 MEAANSMSM 195


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 318 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 410
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 180 LWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 275
           LW+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 210 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 317
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,535
Number of Sequences: 5004
Number of extensions: 44076
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)