Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E17
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 93 1e-19
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 87 7e-18
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 44 7e-05
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 40 0.002
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 40 0.002
02_05_1202 + 34932291-34933027,34933297-34933774 37 0.014
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 37 0.014
11_06_0584 - 25220371-25222917 31 0.90
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 31 0.90
07_03_0803 - 21620754-21620955,21621718-21621780,21622172-216222... 30 1.6
06_01_0611 + 4420873-4422207 30 1.6
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 29 2.7
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 3.6
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 29 3.6
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 28 4.8
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60... 28 6.3
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 6.3
01_04_0051 + 15430980-15431591 28 6.3
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 27 8.4
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 27 8.4
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 27 8.4
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 27 8.4
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 27 8.4
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 27 8.4
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609... 27 8.4
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 27 8.4
06_01_1205 - 10406603-10406651,10407013-10407476 27 8.4
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 27 8.4
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 27 8.4
02_05_0565 + 30010395-30010485,30011604-30011678,30011913-300121... 27 8.4
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 93.5 bits (222), Expect = 1e-19
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +2
Query: 74 PAGKVPAFXSADGKVLLTESNAIAYYVA----NXSLRGGXLATQARVWQWASWSDSELLP 241
P GK+P + +G V ESNAIA YVA N SL G L + + QW +S +E+
Sbjct: 74 PLGKIPVLETPEGAVF--ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDA 131
Query: 242 ASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 421
W++P LG + E A + L +L L+ HL + T+LV +TLAD+++ L
Sbjct: 132 NIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNL 191
Query: 422 LHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPK 574
+ F +L S S +V+R+F T+ +QP V+G + P K
Sbjct: 192 YYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKK 242
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 87.4 bits (207), Expect = 7e-18
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Frame = +2
Query: 74 PAGKVPAFXSADGKVLLTESNAIAYYV-------------ANXSLRGGXLATQARVWQWA 214
P GK+P + DG V ESNAIA YV A+ L G L A + QW
Sbjct: 50 PIGKIPVLETPDGPVF--ESNAIARYVLSHCHFPEVTRSKADNPLYGSSLIEYAHIEQWN 107
Query: 215 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 394
+S +E+ W++P LGI + + E A + L +L L+ HL + T+LV +TL
Sbjct: 108 DFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTL 167
Query: 395 ADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPK 574
AD+++ L F ++ S S +V+R+F T+ +QP V+G + + P K
Sbjct: 168 ADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQKK 227
Score = 87.0 bits (206), Expect = 1e-17
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Frame = +2
Query: 74 PAGKVPAFXSADGKVLLTESNAIAYYVANXS-------------LRGGXLATQARVWQWA 214
P GKVP + DG V ESNAIA YV + S L G L A + QW
Sbjct: 611 PIGKVPILETPDGPVF--ESNAIARYVLSSSHFPEVTRSKSDNPLYGSSLIEYAHIEQWI 668
Query: 215 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 394
+S +E+ + W+FP LG + + E A + L +L L+ HL + T+LV +TL
Sbjct: 669 DFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTL 728
Query: 395 ADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPK 574
AD+++ L F ++ + S +V+R+F T+ +QP V+G + + P K
Sbjct: 729 ADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQVQKK 788
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 314 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFL 493
S+ AA LDG+L +RTFLV+ +++AD++V+S L Q N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFN 152
Query: 494 TVAHQPQ-----VSAVVGSLTLCAAP 556
++A VSA VG + +P
Sbjct: 153 SIADYSDTLDEVVSAYVGKRGIGKSP 178
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 314 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 490
S+ A +DG+L++RTFLV +T+AD+ V+S L Q N+ RWF
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 39.5 bits (88), Expect = 0.002
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Frame = +2
Query: 74 PAGKVPAFXSADGKVLLTESNAIAYYVANX-SLRGGXL----ATQARVWQWASWSDSELL 238
P G++P DG +L ES AI Y+A G L A+ A++ W
Sbjct: 55 PFGQIPVLQ--DGDEVLYESRAINRYIATKYKAEGADLLPAEASPAKLEVWLEVESHHFY 112
Query: 239 PASCAWVF-----PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADV 403
PA VF P LG + V+ + L L V D HL +L R +LAD
Sbjct: 113 PAISGLVFQLLIKPLLGGAT-DTAAVDEHAAALAQVLDVYDAHLAGSRYLAGNRFSLADA 171
Query: 404 IVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQP 511
S LL + + V +S +V+ W+ ++ +P
Sbjct: 172 NHMSYLLFLSKTPMAELV-ASRPHVKAWWDDISSRP 206
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +2
Query: 287 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLH--AFQHVLDPSVR 460
+++ + A +L AAL L+ HL +L + +TLADV +F+TL+ H L R
Sbjct: 252 SQEAYDAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLVRFDLVYHSLFRCTR 311
Query: 461 SSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTY 565
L+ Q+ V G+ + A Y
Sbjct: 312 RKLVEYASLHAYTRDIYQMPGVAGTCDMAAIADGY 346
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 36.7 bits (81), Expect = 0.014
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Frame = +2
Query: 74 PAGKVPAFXSADGKVLLTESNAIAYYVANXS-------LRGGXLATQARVWQWASWSDSE 232
P GK+PA DG ++L ES AIA Y+ LR + A V W +
Sbjct: 51 PFGKIPALQ--DGDLVLFESRAIAKYILRKYKSSKVDLLRESDIREAALVDVWTEVEAHQ 108
Query: 233 LLPA------SCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 394
PA C +FP + + N+Q V + L L+ + L +L + ++
Sbjct: 109 YYPALSPIVFECI-IFPIMRGVPTNQQVVHESLEKLKKVLETYEARLSGSRYLAGDFLSF 167
Query: 395 ADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSL 538
AD+ F + F S+ + +V+ W+ + +P + + ++
Sbjct: 168 ADLNHFPFTFY-FMATPCASLFDAYPHVKAWWEGLMSRPSIKKISANM 214
>11_06_0584 - 25220371-25222917
Length = 848
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 384 LSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 220
+++ + R R P + R + +ST C C +PR K +AG S+++D
Sbjct: 386 INIRKTARRRELPQKQHQHKLR--WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 302 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAF-QHV 442
E AK++LL L+ L+G L R+F + D+++ FS++ H + QH+
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYKQHM 159
>07_03_0803 -
21620754-21620955,21621718-21621780,21622172-21622250,
21623312-21623424,21623500-21623798
Length = 251
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 550 RTERERADDGRHLRLVGD--GQEPTLN--VYQRRTDARV*HVLESMQQCTEDNDIGKCDS 383
R R +G H RLV D Q+P + ++ R DA L +Q+CT I C S
Sbjct: 67 RKSLNRNHEGGHQRLVKDYFSQDPIYSDKQFRARRDASSRQGLSPLQKCTAAIRILACGS 126
Query: 382 LGN 374
LG+
Sbjct: 127 LGD 129
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 460 FVADKRSAL-----VPDRRPPAASVGRRRLAHALC 549
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +2
Query: 200 VWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVT 379
V +W + +LP A L ++ K+ V+R KS L A G+L+ + F +
Sbjct: 411 VARWGNLIGYIVLPFRIAMFHDPLEYIRQGKRTVDRKKSSLEAIFTYWSGNLIVKLFGIK 470
Query: 380 ERITLADVIVFSTLLHAFQHVLDPS 454
L ++ +T L +F ++ P+
Sbjct: 471 TAAALCHGMLANTTL-SFSSMVGPA 494
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 357 SHAPSLLPRESHLPMSLSS 413
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -2
Query: 420 SVLKTMTSASVILSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEA 241
S + M +A V + +K RVR PSST ++A+RS C + + + A+
Sbjct: 410 SAVDRMVNA-VKVEPKKKARVRPSPSSTLRSANRSTAGTLVVCPASVLRQWASELAAKVT 468
Query: 240 GSSSLS 223
SS LS
Sbjct: 469 ESSKLS 474
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 557 EEPHRA*ASRRRPTLAAGGRRSGTNAERLSATNGRSGLARAGKHAA 420
++PHR A R+P A+G G A R+S + + R HAA
Sbjct: 32 QQPHRP-APLRQPLAASGHCGGGRGARRVSRSRSSAAHPRGRLHAA 76
>05_01_0091 +
602481-602721,602819-602901,603431-603560,604188-604267,
604353-604442,605019-605143,605702-605762,605839-605889,
605976-606053,606136-606241,606333-606478,607054-607176
Length = 437
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 144 AMALLSVRSTFPSALXNAGTXPAGNCXQEGCGLVGRAKDE 25
A ALL S + S+L A T P+ + G LV RAK++
Sbjct: 39 AAALLLALSLYASSLPRAPTTPSSSSNLVGLTLVRRAKEK 78
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 306 RSTFCLLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRAWV 187
R T C NC+I + T Q + + C+T WV
Sbjct: 470 RKTICRTNCLICKGTSTSEQNSEDENPDSSRTACETPKWV 509
>01_04_0051 + 15430980-15431591
Length = 203
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 427 CFPARARPERPFVADKRSALVPDRRPPAASVGRRRLAHA 543
C R P ++ A+ P RRP A+ GRRR HA
Sbjct: 15 CMRQRRDPLLASLSRSSLAIEPPRRPCHAADGRRRRTHA 53
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 457 PFVADKRSALVPDRRPPAASVGRRR 531
P A RS + P R PPAA GR R
Sbjct: 81 PIRAGSRSTVPPSRPPPAAGGGRGR 105
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 446 DPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXP 571
DPS R + +W L + PQ V SL L A PP + P
Sbjct: 28 DPSAR---LAANQWLLALQRSPQAWGVATSL-LAAPPPGHPP 65
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 457 PFVADKRSALVPDRRPPAASVGRRR 531
P A RS + P R PPAA GR R
Sbjct: 81 PIRAGSRSTVPPSRPPPAAGGGRGR 105
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -1
Query: 550 RTERERADDGRHLRLVGDGQEPTLNVYQRRTDARV*HVLESMQQCTEDNDIGK 392
RTE E L + DGQE LN R + +E +C EDN K
Sbjct: 382 RTEIEEHSPKDELN-IDDGQEIVLNKKSRVLIGSISVAIEDGSECLEDNQYSK 433
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 457 PFVADKRSALVPDRRPPAASVGRRR 531
P A RS + P R PPAA GR R
Sbjct: 81 PIRAGSRSTVPPSRPPPAAGGGRGR 105
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 409 LQYTAACFPARARPERPFVADKRSALVPDRRPP-AASVGRRRLAHALCG 552
++ TAA A AR PF + +A P R P +A+ GRR +A G
Sbjct: 1 MEATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLVARRAAG 49
>07_01_0785 +
6095041-6095135,6095455-6095760,6098458-6098554,
6098943-6098999,6099202-6099751,6099922-6100234,
6100245-6100335,6101002-6101469
Length = 658
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 551 PHRA*ASRRRPTLAAGGRRSGTNAERLSATNGRSG 447
P A A RRR AA + T AE +S++NGR+G
Sbjct: 541 PSAAAAGRRRKRSAAAA--TATAAEGMSSSNGRNG 573
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 457 PFVADKRSALVPDRRPPAASVGRRR 531
P A RS + P R PPAA GR R
Sbjct: 76 PIRAGSRSTVPPSRPPPAAGGGRGR 100
>06_01_1205 - 10406603-10406651,10407013-10407476
Length = 170
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 246 PALGSSLTLVSCNSTNRMLN 305
PALG + T+V C+ST LN
Sbjct: 113 PALGKATTVVMCSSTKHALN 132
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 457 PFVADKRSALVPDRRPPAASVGRRR 531
P A RS + P R PPAA GR R
Sbjct: 72 PIRAGSRSTVPPSRPPPAAGGGRGR 96
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 457 PFVADKRSALVPDRRPPAASVGRRR 531
P A RS + P R PPAA GR R
Sbjct: 60 PIRAGSRSTVPPSRPPPAAGGGRGR 84
>02_05_0565 +
30010395-30010485,30011604-30011678,30011913-30012138,
30014432-30014649,30015170-30015303,30015424-30015675,
30016009-30016416
Length = 467
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 396 ASVILSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNC 280
ASV+L + +R S T + ASR+ A +TF L C
Sbjct: 241 ASVLLEIEDTLRSPPPESETMRTASRASIAVTTFFYLCC 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,989
Number of Sequences: 37544
Number of extensions: 364088
Number of successful extensions: 1250
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -