Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E17
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 73   2e-13
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 36   0.025
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   4.9  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   6.5  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   6.5  
SB_10705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 45/117 (38%), Positives = 64/117 (54%)
 Frame = +2

Query: 71  FPAGKVPAFXSADGKVLLTESNAIAYYVANXSLRGGXLATQARVWQWASWSDSELLPASC 250
           FP GKVPAF +                 AN   R   L T      + +++D ELLPA+ 
Sbjct: 49  FPLGKVPAFETK---------------TANACTRAMPLLT-----TYVNFADQELLPAAA 88

Query: 251 AWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 421
            WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 89  TWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
 Frame = +2

Query: 74  PAGKVPAFXSADGKVLLTESNAIAYYVANXS--LRGGXLATQARVWQWASWSDSELLPAS 247
           P   +P   + +G      SN I  Y+A  S  L G  L  + +V QW   +  +   A 
Sbjct: 45  PFNTLPLLETKEGTFF--SSNTIIRYLAASSDKLYGSDLFQRGQVDQWLDITTCDFEAAV 102

Query: 248 CAWVFPYLGIMQFNKQNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 421
            A      G      ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T 
Sbjct: 103 AAVAIAKEG------RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATS 155

Query: 422 LHAFQHVLDPSVRSSLINVQRWF 490
           +      L    R    N+  W+
Sbjct: 156 IAVILTSLGDEDRKPYQNIVSWY 178


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 257 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 400
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 361  THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 492
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 275 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 409
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 352 SSHTHLPC--YRENHTCRCHCLQYT 420
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_10705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 1   PAVXVAPHFVFGAPNKSAAFLXAVSCRXSACIRKCRWKGAS 123
           PA+  APH+ +  P  SA+ L       ++ +R  R+KGAS
Sbjct: 23  PAIT-APHY-YEQPTISASLLRTPRYNSTSLLRTARYKGAS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,920,413
Number of Sequences: 59808
Number of extensions: 391529
Number of successful extensions: 1070
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)