Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E17
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 119 1e-27
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 115 2e-26
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 52 2e-14
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 33 0.20
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 3.2
AC024832-3|AAF59615.1| 121|Caenorhabditis elegans Hypothetical ... 28 4.3
Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical pr... 27 7.5
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 119 bits (287), Expect = 1e-27
Identities = 67/173 (38%), Positives = 100/173 (57%)
Frame = +2
Query: 71 FPAGKVPAFXSADGKVLLTESNAIAYYVANXSLRGGXLATQARVWQWASWSDSELLPASC 250
FP G PAF +G LL + +I ++ S A QW +++ LLPA
Sbjct: 40 FPLGVTPAF---EGDALLFGAESIGLHLTGTS-------ANAETVQWLQFAEGYLLPAVL 89
Query: 251 AWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHA 430
+V P + F+K+ VE+ K++L L+VLD L+ +T+LV ER++LADV V LL A
Sbjct: 90 GYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPA 149
Query: 431 FQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 589
FQ+VLD + R S++NV RWF TV +QP V V+G ++L ++ + K+ EL
Sbjct: 150 FQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTEL 202
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 115 bits (277), Expect = 2e-26
Identities = 59/154 (38%), Positives = 92/154 (59%)
Frame = +2
Query: 128 ESNAIAYYVANXSLRGGXLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVER 307
E +A+ + + L + A QW +++ LLPA +V P + F+K+ VE+
Sbjct: 24 EGDALLFGAESIGLHLTGTSANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQ 83
Query: 308 AKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRW 487
K++L L+VLD L+ +T+LV ER++LADV V LL AFQ+VLD + R S++NV RW
Sbjct: 84 YKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRW 143
Query: 488 FLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 589
F TV +QP V V+G ++L ++ + K+ EL
Sbjct: 144 FRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTEL 177
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 52.0 bits (119), Expect(2) = 2e-14
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 434 QHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 589
Q+VLD + R S++NV RWF TV +QP V V+G ++L ++ + K+ EL
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTEL 169
Score = 44.0 bits (99), Expect(2) = 2e-14
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 71 FPAGKVPAFXSADGKVLLTESNAIAYYVANXSLRGGXLATQARVWQWASWSDSELLPASC 250
FP G PAF +G LL + +I ++ S A QW +++ LLPA
Sbjct: 40 FPLGVTPAF---EGDALLFGAESIGLHLTGTS-------ANAETVQWLQFAEGYLLPAVL 89
Query: 251 AWVFPYLGIMQFNKQNVERAKSDLLAALK-VLDGH 352
+V P + F+K+ VE+ K++L L+ VLD +
Sbjct: 90 GYVLPSVSAANFDKKTVEQYKNELNGQLQYVLDAN 124
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 437 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 589
H L PS+ ++L +V RW L A P V GSL L P Q++
Sbjct: 85 HGLSPSLSNALASVSRWKLVRAALPHVIQCCGSLLLANVGEKKLPTSLQKI 135
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 437 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 589
H L PS+ ++L +V RW L A P V GSL L P Q++
Sbjct: 85 HGLSPSLSNALASVSRWKLVRAALPHVIQCCGSLLLANVGEKKLPTSLQKI 135
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 215 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAAL 334
S+ ++ +L A C W + + + +K+NV + KS L+ L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337
>AC024832-3|AAF59615.1| 121|Caenorhabditis elegans Hypothetical
protein Y57E12AL.2 protein.
Length = 121
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 257 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 385
VF L ++ F +N E+ KS++LAA G TF+ T +
Sbjct: 35 VFALLAVVAFANRNPEQMKSEMLAAGVSAAGVATISTFMETHK 77
>Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical
protein C33D9.6 protein.
Length = 485
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +2
Query: 290 KQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSL 469
K+ +E+ +D++A +G ++ F+V +R + + + + F LD +V S L
Sbjct: 54 KEGLEKIVNDIIA-----NGTIIDEMFVVLQRFSEKPALS-NPIQRPFYSNLDDNVPSFL 107
Query: 470 INVQRWFL 493
N+Q+W L
Sbjct: 108 RNLQKWRL 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,404,180
Number of Sequences: 27780
Number of extensions: 272086
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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