Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E16
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   162   3e-41
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.18 
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   3.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   6.6  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.6  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   6.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   6.6  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   8.8  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   8.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   8.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  162 bits (394), Expect = 3e-41
 Identities = 81/168 (48%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
 Frame = +3

Query: 111 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 290
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 291 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 470
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124

Query: 471 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQI 608
           +Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A++  I
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSI 172


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 351 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 464
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 311 CNICRFAKKYHMYNCKQSMC 370
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 124 HQQLELLWVLS-EGAYLVYQHQNWALSLLTRQSKE 225
           HQ +E  W+ S EG  L Y    ++LSL     KE
Sbjct: 125 HQDIE--WITSTEGTVLYYDQSTFSLSLFYPDGKE 157


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 263 WQCLFCKFGPSTCKTSCNICRFAKKYHM 346
           W C  C F     +TSC  C F    H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 503 RNAVS*WNSV*WAHRCVQQISHGKLC*KHSKKITNYXT 616
           ++A S  N+  WA R   +I   KLC  H   I  Y T
Sbjct: 43  KHATSCMNAGVWARRMASEIQLHKLCNGHKNIIHFYNT 80


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 386 RFHARGTYFVYSCTYGTF 333
           RF  R  Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 321 AGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 473
           AG P   I T V K      + + +A +    GA+ IILAGG ++++ + +
Sbjct: 154 AGCPHVVISTPVRKDGTVAPEIVYIANK---IGAEAIILAGGAQAIAAMAY 201


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 220 SIAALTATAPNSDADKLDKLPRKEPI 143
           S+ A+  T+P  + +K DK+PR + +
Sbjct: 167 SLNAMEQTSPKEEDEKSDKVPRVDKV 192


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 217 IAALTATAPNSDADKLDKL 161
           +AA+ ATAP  ++DKLD L
Sbjct: 354 LAAIHATAPAYESDKLDYL 372


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 19  VQQSTSSYWTLTSYCRYLQQWQRS 90
           VQ S +S W L S    ++QW+R+
Sbjct: 610 VQHSKNSAWRLNSSNAKIEQWKRN 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,543
Number of Sequences: 5004
Number of extensions: 52760
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)