Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E16
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 158 3e-39
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 158 4e-39
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 57 1e-08
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 56 2e-08
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 30 1.7
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 30 1.7
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 29 3.9
12_02_0279 - 16704284-16704925 28 5.2
03_06_0064 + 31395168-31395223,31396906-31397368,31397440-313975... 28 5.2
07_03_1285 + 25477542-25477625,25477776-25477832,25477973-254780... 28 6.8
07_01_0218 - 1623373-1625418 28 6.8
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 27 9.0
04_04_0021 - 22192869-22192936,22193232-22193298,22193484-221935... 27 9.0
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 158 bits (384), Expect = 3e-39
Identities = 81/171 (47%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Frame = +3
Query: 111 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 290
+V I RTP+ + AA+ RA + ++EV++GNV SANLG
Sbjct: 16 DVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANLG 75
Query: 291 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 470
QAPARQA + AGLP + CTTVNKVC+SGMK++MLAAQ +Q G D+++AGGMESMSN P
Sbjct: 76 QAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAP 135
Query: 471 FYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQ 617
Y+ R + +G L+DG++ DGL DVYN F MG CAE A + I+ +
Sbjct: 136 KYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISRE 186
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 158 bits (383), Expect = 4e-39
Identities = 80/178 (44%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +3
Query: 90 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGN 269
S + +V + RTPM + AA++RA + ++EV+ GN
Sbjct: 3 SDNIGSRDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGN 62
Query: 270 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGM 449
V SANLGQAPARQA + AG+P + +C+ VNKVCASGMK+ M AAQ + G DI++AGGM
Sbjct: 63 VLSANLGQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGM 122
Query: 450 ESMSNVPFYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQ 617
ESMSN P Y+ R + +G LVDG++ DGL DVY F MGNCAE A +T +
Sbjct: 123 ESMSNAPKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTRE 180
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 108 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 284
++VV+ +A RTP+ V A ++ I EI ++ +G V
Sbjct: 47 DDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPG 106
Query: 285 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 461
+A R A +AG+P++ TVN+ C+SG++++ A ++ G DI + G+ESMS
Sbjct: 107 SQRAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMS 166
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 108 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 284
++VVI +A RT + V A I++ + E+ ++ +G V +
Sbjct: 49 DDVVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPG 108
Query: 285 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 461
+A R A +AG P + TVN+ C+SG++++ A ++ G DI +A G+ESM+
Sbjct: 109 SQRAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT 168
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 263 WQCLFCKFGPSTCKTSCNICRFAKKYHMY 349
WQC C+ G K SC C + + +Y
Sbjct: 43 WQCTICEHGNDAKKKSCEQCGVLRYFSLY 71
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 366 CASGMKSIMLAAQGLQTGAQDIILAGGMES 455
CA+G SI A + +Q G D+++AGG ES
Sbjct: 193 CATGAHSIGDATRMIQFGDADVMVAGGTES 222
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 419 SPRYNTCWWDGIYVKCTFLF 478
S Y+ CWW + V+C F F
Sbjct: 470 SDLYDRCWWPPVCVRCIFRF 489
>12_02_0279 - 16704284-16704925
Length = 213
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 338 YHMYNCKQSMCLWH 379
YH Y CK MCLWH
Sbjct: 201 YHKY-CKSRMCLWH 213
>03_06_0064 +
31395168-31395223,31396906-31397368,31397440-31397598,
31397686-31397751,31397856-31397935,31397991-31398099
Length = 310
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 377 HEIYNVGSTRSTNWSPRYNTCWW 445
H + +G+ S +W P TC+W
Sbjct: 65 HALGGIGACSSVHWQPDRGTCYW 87
>07_03_1285 +
25477542-25477625,25477776-25477832,25477973-25478040,
25478187-25478391,25478429-25478586,25478865-25478940,
25479065-25479124,25479186-25479236,25479663-25479741,
25480183-25480271
Length = 308
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +2
Query: 311 CNICR-----FAKKYHMYNCKQSMCLWHEIYNV 394
C++CR F +++H NC +++C H Y++
Sbjct: 15 CDVCRCTFTTFRRRHHCRNCGRTLCHEHSSYHM 47
>07_01_0218 - 1623373-1625418
Length = 681
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 208 LTATAPNSDADKLDKLPRKEP 146
+ AP D DKL KLPR EP
Sbjct: 274 INGPAPAIDIDKLPKLPRAEP 294
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 282 NLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 455
N+G A + F G P +I T CA+ AA ++ G D+++AGG E+
Sbjct: 193 NMGSALLGMDIGFMG-PNYSISTA----CATSNYCFYAAANHIRRGEADVMIAGGTEA 245
>04_04_0021 -
22192869-22192936,22193232-22193298,22193484-22193585,
22193694-22193807,22194156-22194329,22194835-22195266,
22196328-22196759
Length = 462
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 351 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 455
+++ CA+ AA ++ G D+I+AGG E+
Sbjct: 208 SISTACATSNYCFYAAANHIRRGEADVIVAGGTEA 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,211
Number of Sequences: 37544
Number of extensions: 321302
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -