Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E16
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   8e-29
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            63   2e-10
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   2e-06
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          29   4.0  
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    28   7.0  
SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)             28   7.0  
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score =  124 bits (298), Expect = 8e-29
 Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
 Frame = +3

Query: 111 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 290
           +V+IA AVRTP+                   V  A+ RA I   ++ EV +G V +A  G
Sbjct: 9   DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68

Query: 291 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 470
           Q PARQA I AG+P       VN +C SG+K++ L  Q +  G  +I++AGG ESMS  P
Sbjct: 69  QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128

Query: 471 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQ 617
                R    +G M L+D ++ DGL D +N +HMG  AEN AK+ +++ +
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSRE 178


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
 Frame = +3

Query: 285 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 431
           +GQAPARQA + AG           LP ST CTT+NKVCASGMKSIM AAQ L  G+Q +
Sbjct: 1   MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 40.3 bits (90), Expect(2) = 2e-06
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +3

Query: 81   AAFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVY 260
            A F  +  L+    A+A RT                       AA+E   +    +  V 
Sbjct: 693  AGFLCEAWLSNKKFAAAKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVI 752

Query: 261  IGNVCS-ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQ 404
             GNV   AN     AR   I + +P +T   TVN++C SG +SI+  AQ
Sbjct: 753  FGNVLQCANDAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801



 Score = 28.7 bits (61), Expect(2) = 2e-06
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 504 GMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQ 617
           G Q+ D + + GLTD+     MG  AEN A+K  IT +
Sbjct: 799 GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNITRE 835


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 512 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TLCCQ-HYRFHARGTYFVYSCTYGT 336
           +HS+ R+  +    RY     H T     + S+  TLC Q H R+  + T+ +YS T+  
Sbjct: 102 MHSNTRTLCTKTHARYALKHTHTT-----MHSNTRTLCTQTHARYALKHTHTMYSNTHTL 156

Query: 335 FWQTCKYYSL 306
             QT  +Y+L
Sbjct: 157 CTQTHAHYAL 166


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 247  ISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIAVN 68
            I+S  +P  +   L AT   S    L+K   +E +    A A+ T +  TLVE   + VN
Sbjct: 972  ITSTSVPEQNATVLPATTFQS----LNKTTTEESVVEPNATAVPTRVNATLVETTGMPVN 1027

Query: 67   I 65
            +
Sbjct: 1028 V 1028


>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 263 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 406
           W+C   K  PS  ++   +  F KKY H +    +S  LW+  Y + + R
Sbjct: 80  WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 263 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 373
           WQ  + + GP   KTSC +C    KY++ N     CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +3

Query: 216 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 395
           I + GI  EEI      +V  A +        + + G PKS +CT+VN+V   G+ +   
Sbjct: 72  IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126

Query: 396 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 521
              G        +  GG+       F +  G     G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 547 SVSPSNTIPSTNCIPPYEVSP 485
           +++PSNT+P TNC P  E +P
Sbjct: 928 ALNPSNTVP-TNCCPSGETTP 947


>SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)
          Length = 191

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 270 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 431
           VCSA LG +PA+  V FA L      T         + SIM +   +Q  ++ +
Sbjct: 67  VCSAELGVSPAKLCVSFAELIIGDSLTVDQAKAQMAIWSIMASNNAIQVWSRPL 120


>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 936

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 512 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TL-CCQHYRFHARGTYFVY 354
           +H S+ +FT+L I R+          +  L S L  L   Q Y FHAR   F Y
Sbjct: 763 IHESVATFTALMIARHC-FSLEDVIYHVALPSLLAALPSVQLYGFHARSAIFRY 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,074,426
Number of Sequences: 59808
Number of extensions: 408458
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)